Query= MSMg01no110_k01.b1 MSMg01no110_k01.b1 CHROMAT_FILE:
MSMg01no110_k01.b1 PHD_FILE: MSMg01no110_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:16 2005
(339 letters)
>mm_chr13_54963166_54963904
Length = 739
Score = 656 bits (339), Expect = 0.0
Identities = 339/339 (100%)
Strand = Plus / Plus
Query: 1 gctgctcctgcatgactgaattccctgccctcgggcacacacccctctaatgagtccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgctcctgcatgactgaattccctgccctcgggcacacacccctctaatgagtccaag 260
Query: 61 gaggatggtttaaagcaggcctataattgtgcttctgacaattcgctctggcagcatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggatggtttaaagcaggcctataattgtgcttctgacaattcgctctggcagcatggg 320
Query: 121 agacgtcggcaaaattattattattgttgttgttaggtaatatttattaggcgctctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacgtcggcaaaattattattattgttgttgttaggtaatatttattaggcgctctgca 380
Query: 181 caggacgggccattttctgcttgcttctaatcagttttggttccccgaagaaagattcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggacgggccattttctgcttgcttctaatcagttttggttccccgaagaaagattcgg 440
Query: 241 gagatgacataaaaaagctgcaggaacctcagaggagcacacacctgcagcggggctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagatgacataaaaaagctgcaggaacctcagaggagcacacacctgcagcggggctttg 500
Query: 301 gcaggtgggggtggggagtatcgggccgggcagagggga 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggtgggggtggggagtatcgggccgggcagagggga 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_k01.g1 MSMg01no110_k01.g1 CHROMAT_FILE:
MSMg01no110_k01.g1 PHD_FILE: MSMg01no110_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:16 2005
(525 letters)
>mm_chr13_55116079_55117002
Length = 924
Score = 969 bits (501), Expect = 0.0
Identities = 519/525 (98%), Gaps = 1/525 (0%)
Strand = Plus / Minus
Query: 1 aggagccgagaggaagtcaccaggatacggagcacaaagagagaggtggcttctcttcct 60
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 724 aggagccgagaggaagtcaccaggatatggagcac-aagagagaggtggcttctcttcct 666
Query: 61 tgtgaccctcgcaggatgcaggagcttggagtagcctttgaacagcaagcgagtcgaggt 120
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgtgaccctcgcaggatacatgagcttggagtagcctttgaacagcaagcgagtcgaggt 606
Query: 121 gagaggagctgcaagaagggggactggagggccagtggggctcagggagaatggaacagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gagaggagctgcaagaagggggactggagggccagtggggctcagggagaatggaacagg 546
Query: 181 atgctaggcagcccccaggaagcagagggcctaagaaggcagggggcaagttgggcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 545 atgctaggcagcccccaggaagcagagggcctaagaaggcagggggcaagttgggtagga 486
Query: 241 cagtcctgtcccagctgaagtcagagaatggctacctccccagtgttggcttgcttcttc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 485 cagtcctgtcccagctgaagtcagagagtggctacctccccagtgttggcttgcttcttc 426
Query: 301 ttcccacatgcaggaatgcttgcagcaattcaaggtgaccaggacacagttgcagcagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttcccacatgcaggaatgcttgcagcaattcaaggtgaccaggacacagttgcagcagat 366
Query: 361 ccaagccagtctcctgtgctccatggagcaggcactgaagggacaggacagtcccgctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccaagccagtctcctgtgctccatggagcaggcactgaagggacaggacagtcccgctcc 306
Query: 421 ttctgtccggatgctgcccacatacgtgaggtccacaccacacggcaccggtgggtaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttctgtccggatgctgcccacatacgtgaggtccacaccacacggcaccggtgggtaaca 246
Query: 481 cagactcggatgggcggccagacacggggaatgtgctctgactgg 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagactcggatgggcggccagacacggggaatgtgctctgactgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
