BAC Information

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BAC

Clone NameMSMg01-111B12
Chromosome13 (Build37)
Map Location 115,302,063 - 115,302,804
singlet/doubletsinglet
Overlap genenone
Upstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
Downstream gene4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111B12.T7 (MSMg01no111_b12.b1)MSMg01-111B12.TJ (MSMg01no111_b12.g1)
ACCAG323851AG323852
length1,1351,144
length of high quality
(start - end)		750 (43 - 792)376 (70 - 445)
definitionCHROMAT_FILE: MSMg01no111_b12.b1 PHD_FILE: MSMg01no111_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:58 2005CHROMAT_FILE: MSMg01no111_b12.g1 PHD_FILE: MSMg01no111_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGTGCATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCTTGCTTTGTAGACGTTAAAGACATTTTGTGGGTCAGACAAGAGCA
CAACATTGTTATATTTGCAAACATCTCTACAGTTCAACATCAGCCCACCT
GTGTTACAACGCCTGTTTCTAGATACCAATTTTGAGCTTTCTAAATAGCA
AGCCACCGCGAAACAATGCTTTCTTATCCTTAGCGATATTTGAAAACTCA
TATTCTGAACAAAATTTCAAAATCCGTTTTGAGCAATGGCAATGTATCTG
AACCAGTTGTGTTTTCTAAATTGGCGACTTGGGTGGGAATATTTATTTGA
GTAAACAAATTACAATACATTTGCTTTGTGAAAAGTTGTCCTTTGAACAA
CAACATCCTAATACTTGCAAATGTAACCTTTGGTTTACATTTATTGTAAA
TTATTGGTGCCAGCAAAGGCTGTTTGATTGGAGCAGTAGTTCCCAGTGAG
AGGATTTTTTAGAAATGTCTGGGAATATCTGACTTGTCACAACTTGGAGA
AGAATGGAGGGTGAGGGAAGAGAGCGCTGCTTAACATCTACAGCCAATGA
AGAAGCCTCCTACAGAGACCTCTTAACAAATAATGTTAGGCCAAAAATTA
AAAAATAATAAAAAAAATAGTGTCACTGTTGCAAACACCAATTAGATGTT
ATTCTGGCTCCTTGGCATGTTTTATTGTGCAATTTTGGTCTGTATTTTCT
CTTTTTAGTGTAGTGTAGTTTGGTTTATTGTTCTGGCTTTGTTTGTGAGT
TTTTTGTTGTNTTTTGTTGTTTCTNTTCTTTTCTCTTCCTTTCCTTTTTC
TTCTTTTTTTCTTTCTCTCTCTTTCTTCTTCCTTTTTTTTTCTCCCCTAT
CCTCTTATATTTATTTTATCTTTTTTTCTTCTTTTTCTTTTTTTTTTTTT
TCCTTTCTTTTATCTCTTATCTCTTTCTTTTCTTTTTTACTTTCATTTCT
ATTTTATTTCTTCTTTTTTTCTTTCCCATTTTCTTTTTCCTCTTCTTCTC
TTCTCTTCCTTTTCTTCATTTTCTTTACCTTTTTCTTTTTACCTTCTCTC
CTCTCTTCTCTTATTATTATTTTTCTTCTTTTTAG

NTAACAAGGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAACCCCATTTTTAATGG
GGTTACTTTGAATTTCTGGAGTCCAGCTTCTTAAGCTCTTTGTATATATT
GGATATTAGTCCCCTATCAGATTTAAGACTGGTAAAAATCCTTTCCCAAT
CTGTTGGTGGCCTTTTTGTCATATTGACAGTGTCTTTTGCCTTACAGAAG
CTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCACA
AGTCTTTGCTGTTTTGTTTAGGAATTTTTCCTCTGTGCCCATATCTTCGA
GGGTTTTCCACACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG
TGAGATGGTAGTTAGGCTTCCCAGGAGTCTTATGAACTAACTAATGGTTA
CAAATTAATAAGGTGCTATTCAAACTCAAGCTATGCGAATGTAGAGTGAA
ATTATATTTGCACTAAGATGAGTAATATGTCGCAGTCCTCTTTCTAATTT
TTTCACTCTTGACTGTGAGGATGAAGTTAAGCCTTTCATATTTCTTCCCC
ACCCAGCTTTGCACTCTGACGTCACCATGAGAGTGTGAAGCCAACTGGTT
GGACCATCAGCCCATGTCCCCCACAGATAGATCTTTTCATTCCCAGAGAA
ATGGTTGCTGGATGCCATAAATTCTCAGCAAAAGCAAATTGTCTCATCCC
CCTTCTACGTCCTCATAGCATAACAATAAAAGTAGGAAGAGTGTTTGAGA
TGGCTCCCCAGGCAAAGGTACTGACTGCTGTGTTTGAAGACCCAAGTTTG
ACCCTTAGATTCCACACGATAAAGGGAAGATAATTGACTCCTGAAAGTTG
TCCTCTGAACTTTCAAAAATTCATCAAACTGGGGCCTGCCCGTATGTGCA
TTATGCCTGTGGTGTGCACCCCTCTTCCGCCCATAATTCTCTGTACCAAT
TTTAAAAAACACTTTTCATTGTCGTGTTGAAATCCCCCTAAACTCAAAAA
CCCATTTTTTGAAAGTAATTTCTTATCCGTGCCCCATGGGAATAAATAGT
CCTTCAGTTCCCTCCCCATAATTCTCTTTGAAAGTAATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_b12.b1 MSMg01no111_b12.b1 CHROMAT_FILE:
MSMg01no111_b12.b1 PHD_FILE: MSMg01no111_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:58 2005
         (750 letters)



>mm_chr13_115302005_115303154
          Length = 1150

 Score = 1388 bits (718), Expect = 0.0
 Identities = 736/742 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcttcttgctttgtagacgttaaagacattttgtgggtcagacaagagcacaacattgtt 68
           ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 800 tcttcttgctttgtagatgtcaaagacattttatgggtcagacaagagcacaacattgtt 741

                                                                       
Query: 69  atatttgcaaacatctctacagttcaacatcagcccacctgtgttacaacgcctgtttct 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atatttgcaaacatctctacagttcaacatcagcccacctgtgttacaacgcctgtttct 681

                                                                       
Query: 129 agataccaattttgagctttctaaatagcaagccaccgcgaaacaatgctttcttatcct 188
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agataccaattttaagctttctaaatagcaagccaccgcgaaacaatgctttcttatcct 621

                                                                       
Query: 189 tagcgatatttgaaaactcatattctgaacaaaatttcaaaatccgttttgagcaatggc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagcgatatttgaaaactcatattctgaacaaaatttcaaaatccgttttgagcaatggc 561

                                                                       
Query: 249 aatgtatctgaaccagttgtgttttctaaattggcgacttgggtgggaatatttatttga 308
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 aatgtatctgaaccagttgtgttttctaaattggcgacttgggtgggactatttatttga 501

                                                                       
Query: 309 gtaaacaaattacaatacatttgctttgtgaaaagttgtcctttgaacaacaacatccta 368
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtaaacaaattacaatacagttgctttgtgaaaagttgtcctttgaacaacaacatccta 441

                                                                       
Query: 369 atacttgcaaatgtaacctttggtttacatttattgtaaattattggtgccagcaaaggc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atacttgcaaatgtaacctttggtttacatttattgtaaattattggtgccagcaaaggc 381

                                                                       
Query: 429 tgtttgattggagcagtagttcccagtgagaggattttttagaaatgtctgggaatatct 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtttgattggagcagtagttcccagtgagaggattttttagaaatgtctgggaatatct 321

                                                                       
Query: 489 gacttgtcacaacttggagaagaatggagggtgagggaagagagcgctgcttaacatcta 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gacttgtcacaacttggagaagaatggagggtgagggaagagagcgctgcttaacatcta 261

                                                                       
Query: 549 cagccaatgaagaagcctcctacagagacctcttaacaaataatgttaggccaaaaatta 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagccaatgaagaagcctcctacagagacctcttaacaaataatgttaggccaaaaatta 201

                                                                       
Query: 609 aaaaataataaaaaaaatagtgtcactgttgcaaacaccaattagatgttattctggctc 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaaaataataaaaaaaatagtgtcactgttgcaaacaccaattagatgttattctggctc 141

                                                                       
Query: 669 cttggcatgttttattgtgcaattttggtctgtattttctctttttagtgtagtgtagtt 728
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cttggcatgttttattgtgcaattttggtctgtattttctctttttagtgtagtgtagtt 81

                                 
Query: 729 tggtttattgttctggctttgt 750
           ||||||||||||||||||||||
Sbjct: 80  tggtttattgttctggctttgt 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 750
Length of database: 1150
Length adjustment: 10
Effective length of query: 740
Effective length of database: 1140
Effective search space:   843600
Effective search space used:   843600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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