Query= MSMg01no111_c16.b1 MSMg01no111_c16.b1 CHROMAT_FILE:
MSMg01no111_c16.b1 PHD_FILE: MSMg01no111_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:08 2005
(684 letters)
>mm_chr13_90981163_90982248
Length = 1086
Score = 696 bits (360), Expect = 0.0
Identities = 447/498 (89%), Gaps = 37/498 (7%)
Strand = Plus / Minus
Query: 223 aaccaaccaaccaaccaaccagccaaacaaaccaaaaaccacaacccaaaccccaaagat 282
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1060 aaccaaccaaccaaccaaccagccaaacaaaccaaaaaccataacccaaaccccaaagat 1001
Query: 283 ccaaaccaacaaaacaaacagcaaacaaaaacagcagcagtagcagcagcagaat----- 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 ccaaaccaacaaaacaaacagcaaacaaaaacagcagcagtagcagcagcagaatcatca 941
Query: 338 ----------------------------cagcagcagcagcagcaacaacaactacaata 369
||||||||||||||||||||||||| ||||||
Sbjct: 940 tcatcatcgtcatcatcatcatcatcagcagcagcagcagcagcaacaacaacaacaata 881
Query: 370 acaaaacaaacaagaacacagc-aaaaaca--tgtttgtgagggacagtgagacattgca 426
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 880 acaaaacaaacaagaacacagcaaaaaacatgtgtttgtgagggacagtgagacattgca 821
Query: 427 atatgtgtacgttatatatgaagatcaacttggggtgttttcctctagtatctgttggtg 486
|| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 820 atgtgtgtacattatatatgaagatcaacttggggtgatttcctctagtatctgttggtg 761
Query: 487 agcatgtagttaattattacatggagctctagtctgcacaggtgagcacagagggtccat 546
||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||| |
Sbjct: 760 agcatgtagttaactattacatggatctctggtctgcacaggtgagaacagagggtctac 701
Query: 547 gtgcaggggaggaggctacaaaaatgagcaagagatgtagactggagctgtggttcagtg 606
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gtgcagggcaggagggtacaaaaatgagcaagagatgtagactggagctgtggttcagtg 641
Query: 607 gtggattgcctacctggcatttaccaagacctatgcgatatatgttcagtagttgtgtga 666
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 640 gtggattgcctacctggcattta-caagacctatgtgatatatgttcagtagttgtgtga 582
Query: 667 ggacattgtgagaggaaa 684
||||||||||||||||||
Sbjct: 581 ggacattgtgagaggaaa 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1086
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1076
Effective search space: 725224
Effective search space used: 725224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_c16.g1 MSMg01no111_c16.g1 CHROMAT_FILE:
MSMg01no111_c16.g1 PHD_FILE: MSMg01no111_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:08 2005
(687 letters)
>mm_chr13_90851001_90852087
Length = 1087
Score = 1100 bits (569), Expect = 0.0
Identities = 662/709 (93%), Gaps = 39/709 (5%)
Strand = Plus / Plus
Query: 1 aatataaaacctgcagtcaaggcatctaaatcttcagctaacaaagatggccgctgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 196 aatataaaacctgcagtcaaggcatctaaatcttcagctaacaaagatggcagctgggaa 255
Query: 61 agaagcacagttttatgtgcatttttaaaactctaactgctactgtgtgtggtagagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agaagcacagttttatgtgcatttttaaaactctaactgctactgtgtgtggtagagcat 315
Query: 121 ggaggttaagaggaaaagccaagaatttggttaagagtctgcagagtgaccataaggcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggaggttaagaggaaaagccaagaatttggttaagagtctgcagagtgaccataaggcac 375
Query: 181 agatacaacggcaacctgaacaggacagtgattctggaaatacctgttagccatcagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agatacaacggcaacctgaacaggacagtgattctggaaatacctgttagccatcagtct 435
Query: 241 gaaaccttgtgaacaaatgacttcctataggttggatggcagggctgtccgggatatgct 300
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 436 gaaaccttgggaacaaatgacttcctataggttggatggcagggctgtcggggatatgct 495
Query: 301 atcctggagcacaaggaaaggtgacagagagaagagcatgacctcagctggaaaggaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atcctggagcacaaggaaaggtgacagagagaagagcatgacctcagctggaaaggaagg 555
Query: 361 tgccaggaagcaagccctgcccaagtggtactgagccagcagtgggggcttcaagtgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgccaggaagcaagccctgcccaagtggtactgagccagcagtgggggcttcaagtgagg 615
Query: 421 tacacaccagagtcagaaggcactgtcacttagtgcatctgctcaacttagtc---at-- 475
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct: 616 tacacaccagagtcagaaggcactgtcacttagtgcatctgctcaacat-gtcttaatga 674
Query: 476 tccag-----g------gtgctttcttacttggga----aag-aa-aaagcacagttgtc 518
||| | | ||||||| || ||| ||| || ||||||| |
Sbjct: 675 tcctgttcctgacaactgtgcttt-tt-ctt----tcccaagtaagaaagcaccct---- 724
Query: 519 aggaacaggatcattaagacatgtcttaattatggagacctctaattgtaatgattctgc 578
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 -ggaat--ga-c--taagacatgtcttaattatggagacctctaattgtaatgattctgc 778
Query: 579 actttatgcgggaaaggatatatagcctggtttgtataatgcttgaagcaacaaggtcta 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 actttatgcgggaaaggatatatagcctggtttgtataatgcttgaagcaacaaggtcta 838
Query: 639 ggaatccatcagcttttaatgcatgacctcattgttccctgcaaaaatc 687
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ggaatccatcagcttttaatgcatgacctcattgttccctgcaaaaatc 887
Score = 147 bits (76), Expect = 3e-39
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 467 cttagtcattccagggtgctttcttacttgggaaagaaaaagcacagttgtcaggaacag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cttagtcattccagggtgctttcttacttgggaaagaaaaagcacagttgtcaggaacag 677
Query: 527 gatcattaagacatgt 542
||||||||||||||||
Sbjct: 676 gatcattaagacatgt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
