BAC Information

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BAC

Clone NameMSMg01-111F23
Chromosome13 (Build37)
Map Location 66,991,982 - 66,992,555
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061
Downstream geneUqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111F23.T7 (MSMg01no111_f23.b1)MSMg01-111F23.TJ (MSMg01no111_f23.g1)
ACCAG324058AG324059
length1,1011,100
length of high quality
(start - end)
574 (106 - 679)576 (117 - 692)
definitionCHROMAT_FILE: MSMg01no111_f23.b1 PHD_FILE: MSMg01no111_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:36 2005CHROMAT_FILE: MSMg01no111_f23.g1 PHD_FILE: MSMg01no111_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:36 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATTGGGGCTATAGACTACTAAGGGAGAGGATCCGCGGAATTCTTCCAAG
AGGAAGCCCTTAAAGTCCATTACAAATACTGCCAGGATCAGTCTACTACC
TCCCTTTCCATTACTGACCCAGTCCCTCATTCTCCAGGCAAACAGGTTGA
TTTTAGCAATGAGGAGGAGGGCATCTCTGCTCCAGCTCTCCAGCTGTTAG
GCCTCCAGCTATCCTCTAGTGCCACTATCTAAGGCCCCTCACTCTCTAGC
CCTTCTGCTCCTGCCCGATCAGAAGTACTCCCAGCTTCCCCCTGGCATGA
TTTAGGGAGACTTTGCCTTCCAGAAAGTTACTCCTGTTGTGGTCACTCCT
GCAATGCCTGCCCTCCTGCTAGACTGCCTCTTCCCCAGAAGCCTCTTTCT
CCTCAAGTAGATTGTGAGGCTTTCCTTGTCAATCTTATCCCTGATGTGGT
GACTAGGCTCTGGATTCCCACTCCTTTGCCAGACTTGGCACTAATCAGAA
AAGCTGCCAATGGTTCCAGCCCAGAATTCCCCTTATTTTGAACAAGTACT
GAAGCAAGGGACCATGCACCTCCAGACCTATTATGATTGGTCTAATCTCA
GTGCGGCCTGAACCCCACCCCCACGGTTTCTTAATTGGAGGTCTGCATAT
CATGACTTGGCTGAAAATCAGGCTAGGATTAATCTAGAATATAACCTTAA
CATTATTTTTGACATGCTTACCAGCCACCGATCAGGGGGGCGATGAAGGA
GTCAGATGAAAACATGGACATATAATGTAAATATTGCGTTTATTAGTTTT
TCTTTAGCCTGGGAAGACCGATGAGTTCTGGGCCTTGGTGCCCCTGCCCC
CACCCCCACCCCCATTCTTTTGCCTGGGGCAGTTTACTTCCCTTAACCTA
TCCTGATCCTTTTCCCTTTTCGTGGGACGGTTTAAGTTCTGCCCCTTCCT
GGGACCTTAATCCCCTACCTACATGCCCAGGCAAACAAGGCGCCCCGGGC
CCATGGCAGGAAAAAATCCCCCGGCTTTTAACCCCAAATTTGTTCCCCCT
TCCGGGACACCCCCCTTGTAATCCCCACTCCACCCCTATATTTGACCCCC
C
NAATCGTATGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCCTTTCACCTGGAGAGAAACCATACAAATGCAAAGAA
TGTGCCTTGGACTTTACATGTTCATCATATTTTAAGTATCATCAGAGACT
TCATACTGGAGAGAAACCCTACACATGCAAAGAATGTGGGAAAGCTTTTG
CTAAATCTTCATGTCTTATTTTACACCAAAGAATTCATACTGGGGAAAAA
CCCTACAAATGTGAAGAGTGTGGCCAGGCATTTATCTGTTCTTCATACCT
GAGGAAGCATCAGAGGATCCATACTGGTGAGAAACCATACACATGTGAAG
AATGTGGCAAAGCTTTTAGCATTTATTCAACCTATGCTCAACACCAGAGA
ATTCATACGGGAGAAAAACCTTATAAATGCAAGGAATGTGATAAAGCATT
TAATAATCACTCAGCCCTAATTAAACATCAAAGAATTCATACTGGAGAGA
AACCCTATGCATGCAAAGAATGTAGTAAAGCTTTTAATAATAGCTCAAGC
CTTATTCGACATCAGCGAATTCACATTGGAATTGAAACCCTAGAAATTCA
AGGAATTTGGCAGGGCCTTTAGTAATAGTTCAGTGCTTAGCTCCAAAATT
TCATGATAATGAAAAGCTGTAGAAATGAGAAAGGTGACTAATTAATAAGT
ATTCTATACATATACCGTGTAAAACATCATGCATGAAAGAAAGCCTACCA
GTTCCAATAGTGTTGCAACTTTCTCAACTCTTCCTCCTGTCCTACTGATA
CCAGAAAATATATACTGAGGAAGCCTACATGTGTCACTGATGCGTCAAGG
CTTTTACTGACTGTTTACTCCCTCTCAGTGAACTCATGCCTTCCTAGAAA
TCCTCCCCTGTTGATTGGATTTGGAAGGGACTCCTGCCCCGTAGGTGTGG
CCCAAAGCAATTATTTTGGAAAGACCTGTTCCCCTTAGGCCGGTAATAAA
AGCGCATACCTTCAAAATCTTTAACAAAATCTTGAGTTTCCCAATAGGGC
GAACCAAATCCCTCCTTAATATACTCTGAAAATTGCTTGCCTAAAAACCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_f23.b1 MSMg01no111_f23.b1 CHROMAT_FILE:
MSMg01no111_f23.b1 PHD_FILE: MSMg01no111_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:36 2005
         (574 letters)



>mm_chr13_66991782_66992755
          Length = 974

 Score = 1056 bits (546), Expect = 0.0
 Identities = 567/574 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccattactgacccagtccctcattctccaggcaaacaggttgattttagcaatgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccattactgacccagtccctcattctccaggcaaacaggttgattttagcaatgagga 260

                                                                       
Query: 61  ggagggcatctctgctccagctctccagctgttaggcctccagctatcctctagtgccac 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ggagggcatctctgctccagctctccagctgttacgcctccagctatcctctagtgccac 320

                                                                       
Query: 121 tatctaaggcccctcactctctagcccttctgctcctgcccgatcagaagtactcccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctaaggcccctcactctctagcccttctgctcctgcccgatcagaagtactcccagc 380

                                                                       
Query: 181 ttccccctggcatgatttagggagactttgccttccagaaagttactcctgttgtggtca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccccctggcatgatttagggggactttgccttccagaaagttactcctgttgtggtca 440

                                                                       
Query: 241 ctcctgcaatgcctgccctcctgctagactgcctcttccccagaagcctctttctcctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgcaatgcctgccctcctgctagactgcctcttccccagaagcctctttctcctca 500

                                                                       
Query: 301 agtagattgtgaggctttccttgtcaatcttatccctgatgtggtgactaggctctggat 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 agtagattgtgaggctttccttgtcaatcttagccctgatgtggtgactaggctctggat 560

                                                                       
Query: 361 tcccactcctttgccagacttggcactaatcagaaaagctgccaatggttccagcccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccactcctttgccagacttggcactaatcagaaaagctgccaatggttccagcccaga 620

                                                                       
Query: 421 attccccttattttgaacaagtactgaagcaagggaccatgcacctccagacctattatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attccccttattttgaacaagtactgaagcaagggaccatgcacctccagacctattatg 680

                                                                       
Query: 481 attggtctaatctcagtgcggcctgaaccccacccccacggtttcttaattggaggtctg 540
           ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||
Sbjct: 681 attggtctaatctcagtgcgggctgaacaccatccccacggtttcttaattggaggtctg 740

                                             
Query: 541 catatcatgacttggctgaaaatcaggctaggat 574
            |||||||||||||||||||||||||||||||||
Sbjct: 741 tatatcatgacttggctgaaaatcaggctaggat 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)