Query= MSMg01no111_m12.b1 MSMg01no111_m12.b1 CHROMAT_FILE:
MSMg01no111_m12.b1 PHD_FILE: MSMg01no111_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:32 2005
(645 letters)
>mm_chr13_39034816_39035859
Length = 1044
Score = 1152 bits (596), Expect = 0.0
Identities = 633/648 (97%), Gaps = 7/648 (1%)
Strand = Plus / Minus
Query: 1 tatttataagctgaaacagtgtttaaaa---ccttcaggcccattactctcccccctcag 57
|||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct: 844 tatttataagctgaaacagtgtttaaaatagc---caggcccattactctcttccctcag 788
Query: 58 tagacttaagcttatgaacttcaagaacatacacangccttttaataaataaaagacata 117
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 787 tagacttaagcttatgaacttcaagaacatacaca-gccttttaataaataaaagacata 729
Query: 118 ctcttttctatcaatagttaaaattgaggggtatcctttatttttttcagtcttcccaaa 177
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ctcatttctatcaatagttaaaattgaggggtatcctttatttttttcagtcttcccaaa 669
Query: 178 ttgcagtcatgtactgtataaggaagcctgctcacccgtagactgggattatgataatac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttgcagtcatgtactgtataaggaagcctgctcacccgtagactgggattatgataatac 609
Query: 238 tcccctgagataaatttgcccaaagacatcacgtccatctcagtctgtgtgagtgcctga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tcccctgagataaatttgcccaaagacatcacgtccatctcagtctgtgtgagtgcctga 549
Query: 298 tgatgtcacaacaaaatcccctcaggtgcattctccggccacatactctgaagtacgcgg 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 548 tgatgttacaacaaaatcccctcaggtgcattctccggccacatactctgaagtaagcgg 489
Query: 358 tcggtgcatgtgagtggttttgatttttgttttcctgtcataataactaaaataggatcc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcggtgcatgtgagtggttttgatttttgttttcctgtcataataactaaaataggatcc 429
Query: 418 catttctgtcttacaagaacatgcagtgcctggttgaaactaaaacctcctaggattgtt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 catttctgtcttacaagaacatgcagtgcctggttgaaactaaaacctcctaggattgtt 369
Query: 478 gtatgcttgctctgagtgttccttatgctttgggtattaggcatgaacagcacatcgatc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtatgcttgctctgagtgttccttatgctttgggtattaggcatgaacagcacatcgatc 309
Query: 538 catattctgcctggtgaggcactgtgagaggacggcaggccaggcaactgtatgcataat 597
|||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct: 308 catattctgcctggtgaggcactgtgagtggacggcaggccaggcaactatttgcataat 249
Query: 598 gaggccatcttcctcttgtctcacataggaaagcggtacaaccttgca 645
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaggccatcttcctcttgtctcacataggaaagcggtacaaccttgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_m12.g1 MSMg01no111_m12.g1 CHROMAT_FILE:
MSMg01no111_m12.g1 PHD_FILE: MSMg01no111_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:32 2005
(627 letters)
>mm_chr13_38886771_38887797
Length = 1027
Score = 1151 bits (595), Expect = 0.0
Identities = 619/627 (98%)
Strand = Plus / Plus
Query: 1 gaagttgccctctgaacaaagaactgaaggatgttggctactgacacaaggttctgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagttgccctctgaacaaagaactgaaggatgttggctactgacacaaggttctgaaag 260
Query: 61 gtcctgatagcaaaacaagactaaagaaggctgggagggctgggatgtttgattctgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctgatagcaaaacaagactaaagaaggctgggagggctgggatgtttgattctgaaa 320
Query: 121 ggcaggaaaattattattattgctcatctatggctcaagtttctacctaggagttgcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggaaaattattattattgctcatctatggctcaagtttctacctaggagttgcagg 380
Query: 181 agaaagcaaatgaccaactaaaatattggtagtttgagtgataaatggctcttttagtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaagcaaatgaccaactaaaatattggtagtttgagtgataaatggctcttttagtag 440
Query: 241 tgagcccttgaatataacagattgaatattagaaagtttttattctctacagcagctcag 300
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 441 tgagcccttgaatataacagattaaataaaagaaagtttttattctctacagcagctcag 500
Query: 301 ggatcagcggtgagcaattctagaacattctgctccacatggtgactcagctccagcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatcagcggtgagcaattctagaacattctgctccacatggtgactcagctccagcctt 560
Query: 361 cttctgtcttcccatcccccagatctccagaatgcagtgggctaacattttctgtaatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttctgtcttcccatcccccagatctccagaatgcagtgggctaacattttctgtaatga 620
Query: 421 gcccaacagtaagtgtcctacctcttgcactacatctctctctctcttctccctccttcg 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcccaacagtaaatgtcctacctcttgcactacatctctctctctcttctccctccttcg 680
Query: 481 cctcctcattcacacacacacatatacatacacacatgtacatatatgtatatatatatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcctcattcacacacacacatatacatacacacatgtacatatatgtatatatatatg 740
Query: 541 tgtacatgtttatacacatatagacatacatacctgtatatatgtatatgtgtgtatata 600
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 741 tgtacatgtttatacacatatagacatacatacatgtatatatgtatatatgtgtatata 800
Query: 601 tatatacatgcaaatgctcacacgtgc 627
|||||||||||| |||| |||||||||
Sbjct: 801 tatatacatgcacatgcgcacacgtgc 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
