BAC Information

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BAC

Clone NameMSMg01-111O13
Chromosome13 (Build37)
Map Location 95,862,206 - 95,862,686
singlet/doubletsinglet
Overlap genePde8b
Upstream geneLhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111O13.T7 (MSMg01no111_o13.b1)MSMg01-111O13.TJ (MSMg01no111_o13.g1)
ACCAG324460AG324461
length1,2231,209
length of high quality
(start - end)
330 (111 - 440)481 (117 - 597)
definitionCHROMAT_FILE: MSMg01no111_o13.b1 PHD_FILE: MSMg01no111_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:49 2005CHROMAT_FILE: MSMg01no111_o13.g1 PHD_FILE: MSMg01no111_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCTATTTT
CTAGATGTCCTTTAAAAGCTCAGAGTCTGATTTGTGTTAGCTAGTTACCC
CTTTAAAGAGGCCTGCCCTGAAGTGTGGGTGGCATGCTTGGGTCACACCG
TAGAAGAAAACTAATTTTTCTTCTCCCAGAAGCAGTCAGTTGCAAATAAG
TTCTTGGCTAGGGATGGAACTCTGTGTCCACTTCCCCTTCTCCATGCTGG
GGTTTTATCTGGAGTGAACTGTGCAGGTCTTCCGCATGCTGTCCGCGTTT
CTGTGAGTTTATATGTGCATCCGAGCTGCTGTATTTGGGATGTGTTTGCT
TGAAGTCATTCACCACCTCTGGTTCTCACAGTCTTTCCTTTTCCTCATCT
GCATAGATCCCCGAGCCTTGAAGACATCCCATTTAGGACGTATCCCTCCC
AAGGCTCCCACTCTCTGCACGTTGGTTGAAGGTCTCTCTGTTTATTATCT
GCTGCAAGAAGCTTCTCTGAGGAGGGTCGAGCAATCCACTAATCTCTGAA
GATAATCTCTATTGCTGTGTTCACAGAAGGGGCCTTAAATCCAACCAAAC
AGTAGTTGGTTTCTCCACTAGTGTTTGTGCCACTCCTACACCCGTGGTCA
CGTCATGCCAGAACGGTGGTGATTGTGGCTCACCGAATTCATATCTGGAT
GAGAGTGAGGAGCGGCTTTCTCCTCTGGCAGTACGTGTAGCACCTTCCAG
CAATATAAATGCTTAGCTGTTGTGTGCGTAACTTTGAGTTAAGCACCAGC
TTGATTCTCCCTGTTAGATGAACAAAAGTGTCTGGGGTCCTTTAGTAAGA
ACTTACTTATCCGGTTTTTGAAGGGATATCCCATTATCCCTGGTCTTGGT
TGGTGGTTGGTTCTATAAAGAACCTACCTTGACCATTCAACTTGAAATTC
ATATTGTTAACCCTAATCCCTTGGGAACTGGAACTTTTTATATTTGTGTA
ACCTTTTCCCCTAAGGGTTATTGGACTTCTCCCCTATTTTTTGGGGTGGG
CTCTTCCTTTTTAAAACTTCCCCTTTTACCTCTTATTCTTTAAGGAAATC
CTTTCTTTATAGTTAATTAGTGGTTTTCCCGGTATTTGTCTCCTCTTTTT
AAAAATAGAACCCTTCTCTGAGTGGTTATATGTTTTCTCTCTCTTCTCCC
CACTCTTTTTGTCTCCCTCTTTG
CACATGGTAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCTTAAAGGGCCTACCTTTCTAAGATATACAGAACAGC
ACCCGTTGATCCCAGCCACAATTGACAAGAAGACATTGAGAACCAGGAGT
GCGTTCCTTGTGATCCCAACTGCCTACCACTCTGGTGGTAGTGCTAGAGC
ACAGTCAGGGACCCGCATTTGCACTGTGCACTTTGCCCCCACTGGACCAC
TATGTTGTTTATGGATGTGGTCTGGACCCTGCAACAGTCACCTGAATCTT
TGAAACCCTTCGGCAGGCACAGAACAAATGATTGCACTACCCATTATCTT
TCTCTCTCTTCTGTTTCTTTTTTCCCTCACGGCTTTCTAACCTCTACCCT
TAAGGATTAAAAAATAAGGACATCTGAGTTGCAGGTCATAGTTTCCAAGA
ACAAAAATTAACAAGGCCACAGTGTTTTTCTGCCTGAGAAGTATGAATAA
TTAATACACTCGATTAGGTTCCCTGGTTCTAGGAACATGACTCAAATTGA
TTGCCCCAGTTTGCTGCTGGTTTATTTAAATAGAGTCATCTACCCAAACA
TACACCTCGCAGCTGGTCAGGCATGGCATGATAGGGACAGGAAGGGGCAA
TGCTGTGTCATTCCTGTCCCTACCAGTGTCCCCTCATGTCACTAGATAGG
GATTTGGTCTGTCTTTGGGGCATTCTCTCTGAAGAGTTTACCTTTTGATG
GATGTACCTGGTGCCTCAGGTTCTGCATTTCTGGGACTCTATTTAATAAC
CGCCTTATGCCCATATCAACTGAATTGTGTCTGAAACCTCCGGTTTGCAC
GTTTAGTTTGATACGTTCTTTGTCTTTTATTGGAAACCCTTACCCCCATA
ATGAGTCCGGTCAATATGTGGTCTGTCTATAACCTAATTTTCCCTATTTT
TTCAAATTTTGACAAAGTCTTTCCCAATCTTGTCGTTTAATGTTCCTCCT
CCCCTTCCAAACCCTGGAAATTTGCTTTTCCTGGTGCAAACCTTTATCTC
TTTTTCCAAAAATCAATTTGTCTCGTGAATAAATGGCTTTTTTGTTAAAA
ACCTCTGGGCTTCTTGGCTTTGCCCTTCCTCCTAGGGATGTTTAATTTCA
AAATGTAATGGCCCCATCTGTTTATCTTCTGCTTTCTAATAACACCTCTT
TTCTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_o13.g1 MSMg01no111_o13.g1 CHROMAT_FILE:
MSMg01no111_o13.g1 PHD_FILE: MSMg01no111_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:49 2005
         (481 letters)



>mm_chr13_95862006_95862886
          Length = 881

 Score =  907 bits (469), Expect = 0.0
 Identities = 478/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaattgacaagaagacattgagaaccaggagtgcgttccttgtgatcccaactgccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacaattgacaagaagacattgagaaccaggagtgcgttccttgtgatcccaactgccta 622

                                                                       
Query: 61  ccactctggtggtagtgctagagcacagtcagggacccgcatttgcactgtgcactttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccactctggtggtagtgctagagcacagtcagggacccgcatttgcactgtgcactttgc 562

                                                                       
Query: 121 ccccactggaccactatgttgtttatggatgtggtctggaccctgcaacagtcacctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccactggaccactatgttgtttatggatgtggtctggaccctgcaacagtcacctgaa 502

                                                                       
Query: 181 tctttgaaacccttcggcaggcacagaacaaatgattgcactacccattatctttctctc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tctttgaaacccttcggcaggcacagaacaaatgattgcactatccattatctttctctc 442

                                                                       
Query: 241 tcttctgtttcttttttccctcacggctttctaacctctacccttaaggattaaaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttctgtttcttttttccctcacggctttctaacctctacccttaaggattaaaaaata 382

                                                                       
Query: 301 aggacatctgagttgcaggtcatagtttccaagaacaaaaattaacaaggccacagtgtt 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacatatgagttgcaggtcatagtttccaagaacaaaaattaacaaggccacagtgtt 322

                                                                       
Query: 361 tttctgcctgagaagtatgaataattaatacactcgattaggttccctggttctaggaac 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgcctgagaagtatgaataattaatacactcgattaggttccctggttctaggaac 262

                                                                       
Query: 421 atgactcaaattgattgccccagtttgctgctggtttatttaaatagagtcatctaccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgactcaaattgattgccccagtttgctgctggtttatttaaatagagtcatctaccca 202

            
Query: 481 a 481
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)