BAC Information

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BAC

Clone NameMSMg01-112D08
Chromosome13 (Build37)
Map Location 25,721,390 - 25,882,159
singlet/doubletdoublet
Overlap genenone
Upstream gene6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112D08.T7 (MSMg01no112_d08.b1)MSMg01-112D08.TJ (MSMg01no112_d08.g1)
ACCAG324680AG324681
length722738
length of high quality
(start - end)
320 (50 - 369)325 (76 - 400)
definitionCHROMAT_FILE: MSMg01no112_d08.b1 PHD_FILE: MSMg01no112_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:18 2005CHROMAT_FILE: MSMg01no112_d08.g1 PHD_FILE: MSMg01no112_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,881,861 - 25,882,159)(25,721,390 - 25,721,714)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCACTACAGCAGCCTCGATTCATAGGACCAGGTTTTTGAGCACGACC
CATGTCTTCTAGCCCACTCAGGCATCATTCTGGTGACTCTGAAATATCCA
TATGTTCCTCTGTAAAAGCAGTATGTGCTCTTAACTCTTGACCAGAACTT
GGTATCATTTGGATTTACTGGCTCTCTTATAATAATGCACTTGGGCCTTA
TTTTATTACCTACCCCCTATTCACTACTTTTAAAAATATTTGTTCATTTT
CTTTTTTTACCTGAGTAGTGAGCTTGTGCATCTCTGAAGAAGGATCTGAG
TTTATTGTTTTTAATGTTGAGGGCACACTTGTCTAAGAGTGTCTCCTTGT
TATTAATGAAATCTGCATCTCAAAATCTTCTGAGCTTCAGAACTTGACCA
AGAGACTATGGTTTTTCATTGTTGAGGCTGTCCACAGGCACTTCATCATC
CGCCTCTACCCATACTGACCCTTGTGCATTCAGAACTTGACATTTGCGAT
TCATCTTGTATCACGACTTTATAACGGCTATGCTATATAATTCCTTCACT
GCAGTTCACGGACTTATGTACTCCCACACAACCTCATTGCTTCTATTGGA
TAACTGTATGTGATTGTCAATTATTGCTATCTACCTGTTTACCTCCGGAT
TTTATCTTATTTACCATTTTAT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAATAACGAAGCTTAATAGGCAACA
GTCTGGCTATTTAAATTTAAATTTATTGAAATTAAATAGTCACATTTGTA
GAGTTCGGTATCTTCCCATAGTTAGTGGGCATGCCTGTCATTCTTGGACT
TTTATTTTGGAGTGACTTGTGGGCCCAGAGCCAGCTGCTTAGCAACTTGC
TAGTAGCACACCATTACAGCTGAAAGCTCTTGTTCTCAAACATGTATTCC
CCTTTGAGCATTAAAATCTGCTAAAGTTGCAAAGCCTACCGTTGTAAATA
TTTGAAGTGCGAATGAATATATTATTTGAATTTTCTGTAAATGATGCAAT
CGAGAGATTTGAAAACATTACACCTTTGTGGCTGTAAAACGCAATTTTGC
GCATTAATTTTTAACAGAACCTCTTGCTTTGAACCAATCATAAGAACTGC
CTAGCGAGATGAGTTAACTTCATCATAATATTCATTCATTTCACTGATAC
TGTAAAGCTACCGATTATTCATAAAAGATCCCTTGACTTTCTCACCATTT
TAAGCACCTTTCGAAATTATTTGACATCCCGCGAATGCTTTCTATAAATC
AATTCTCCACGCCCAACTTTTTTGTGTATCCCCCCATTTATTTATAACCC
CTCACCGCTCTAAAATGTGTTAAAAATTTCCCCCACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_d08.b1 MSMg01no112_d08.b1 CHROMAT_FILE:
MSMg01no112_d08.b1 PHD_FILE: MSMg01no112_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:18 2005
         (320 letters)



>mm_chr13_25881661_25882380
          Length = 720

 Score =  547 bits (283), Expect = e-160
 Identities = 295/299 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattcactacagcagcctcgattcataggaccaggtttttgagcacgacccatgtcttc 60
           |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 499 gaattcactacaccagcttcgattcataggaccaggtttttgagcaggacccatgtcttc 440

                                                                       
Query: 61  tagcccactcaggcatcattctggtgactctgaaatatccatatgttcctctgtaaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tagcccactcaggcatcattctggtgactctgaaatatccatatgttcctctgtaaaagc 380

                                                                       
Query: 121 agtatgtgctcttaactcttgaccagaacttggtatcatttggatttactggctctctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agtatgtgctcttaactcttgaccagaacttggtatcatttggatttactggctctctta 320

                                                                       
Query: 181 taataatgcacttgggccttattttattacctaccccctattcactacttttaaaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 319 taataatgcacttgggccttattttattacctaccccctattcactatttttaaaaatat 260

                                                                      
Query: 241 ttgttcattttctttttttacctgagtagtgagcttgtgcatctctgaagaaggatctg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttgttcattttctttttttacctgagtagtgagcttgtgcatctctgaagaaggatctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_d08.g1 MSMg01no112_d08.g1 CHROMAT_FILE:
MSMg01no112_d08.g1 PHD_FILE: MSMg01no112_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:18 2005
         (325 letters)



>mm_chr13_25721190_25721914
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 323/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taataacgaagcttaataggcaacagtctggctatttaaatttaaatttattgaaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taataacgaagcttaataggcaacagtctggctatttaaatttaaatttattgaaattaa 260

                                                                       
Query: 61  atagtcacatttgtagagttcggtatcttcccatagttagtgggcatgcctgtcattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagtcacatttgtagagttcggtatcttcccatagttagtgggcatgcctgtcattctt 320

                                                                       
Query: 121 ggacttttattttggagtgacttgtgggcccagagccagctgcttagcaacttgctagta 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacttttattttggagtgatttgtgggcccagagccagctgcttagcaacttgctagta 380

                                                                       
Query: 181 gcacaccattacagctgaaagctcttgttctcaaacatgtattcccctttgagcattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacaccattacagctgaaagctcttgttctcaaacatgtattcccctttgagcattaaa 440

                                                                       
Query: 241 atctgctaaagttgcaaagcctaccgttgtaaatatttgaagtgcgaatgaatatattat 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 atctgctaaagttgcaaagcctaccgttgtaaatatttgaagtgggaatgaatatattat 500

                                    
Query: 301 ttgaattttctgtaaatgatgcaat 325
           |||||||||||||||||||||||||
Sbjct: 501 ttgaattttctgtaaatgatgcaat 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)