BAC Information

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BAC

Clone NameMSMg01-113L13
Chromosome13 (Build37)
Map Location 21,269,981 - 21,270,477
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
Downstream geneTrim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113L13.T7 (MSMg01no113_l13.b1)MSMg01-113L13.TJ (MSMg01no113_l13.g1)
ACCAG325786AG325787
length696681
length of high quality
(start - end)
505 (71 - 575)78 (217 - 294)
definitionCHROMAT_FILE: MSMg01no113_l13.b1 PHD_FILE: MSMg01no113_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:14 2005CHROMAT_FILE: MSMg01no113_l13.g1 PHD_FILE: MSMg01no113_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTTTTGTTCGCCGGTGTAGAACTATGAAAAATGCAGGTGGC
AGATAATGTGTTCTTAGGTCATCAGTGCGGCTCTGGATTTTAGCTTTGTC
ATCCAGGGCTCATGCGGTCTCTGCTTTCCTAACCTCAAGGCAGATGGCCT
GGACAAGCCAGGTAAGTAGGGCAAGGTGGAGGAAGTAGGGGAAAGGAAGC
GCTCCCCCTTCCGGGATTGCTACAGGCTCCCTCCTTTCTCAAGCGATAAC
TGTTTTCTCTTTCTCCACTAATTTAGTAGGCTTGTCATGAGCTTTATGGC
TGAGTTGCCTACTCATTTCCAGCGTTTTCAGTGTTAGAGCTCGAACCCAG
GACGTTAAGCTAGGCAAGTGCTCGTCTCAGACCCATCCACGCAGTTTTTG
TGTTTGTTCCTCCACCTTGGCCTAAATTATTGCAATACCTTATCTGTTTG
CAAATGACTTGGAAATGATTCAGTAGTTAGATGAATGAAATTGCTGCTAT
GAATTTTTTTTAATCAATTATAGCTGTCAGAGAAACCCTGCTGCTACGGC
TGATGTCTGACATTACTAAAACCCCTGAGCTTGGTACAAAATGGTGGACT
CCCTTTGTCAGCAGGGCTTCTTCTTCTCTGACCTTGTCTGGAGAGC
ATGCAGCGGGAGGCGGGNGGCGCCTGTTTCCGCACCGAGGNGAACNAAGA
ATTTCGNGACGGCGGAAGNNGCAAANGAGNGGCCNCAGAAACGGNGCCAA
ACACGCCGCCAAAAAACACCAACAGCGGGCCGCCAACCCAACNCGAAGCG
ANACGAGCGGACAAACAACCGCGAACGACAGAAGGCCACCAACAAGAAGC
CCGCCAACCCCCCAAGGAGAGACAGAAAGGAATTTGATCTGGAAGGGAGG
GAGGCGGACAGGAGCGGATGGGGCAGAGGAAGGGGAAACAGNAACCTTTT
TTTTTTGAAAGAGAAAAGAACCCAAACCCAAGAAAAGGGAAAACCACCCC
CACCACCCCCCGCAAGACCAANCAACAAGAAGGAGCGAACACACGCAGCG
AACCCACAAGCAGAGAACACGAAGCACAGGACCGGAAACAAGGNAACCAA
AGGAAAACCAGCAAGCACCAAAACACCCGGAAAAACACAAGAACAAACCC
CGAAGACGGAAACGCCCACCGAACGCCGAAACAGAAAAAAAGCGGGGAAC
GAAAGNAACCCCCACGGCAACACCGGAACCAACCGACAAAGCGGGAACAA
AAAAACGAGAGGAAAAGCGCCAAACCACACAAGAGGACGCCTCTTGCCTA
AAGCGAGGGCGACCAGACCACCCGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_l13.b1 MSMg01no113_l13.b1 CHROMAT_FILE:
MSMg01no113_l13.b1 PHD_FILE: MSMg01no113_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:14 2005
         (505 letters)



>mm_chr13_21269977_21270880
          Length = 904

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%), Gaps = 2/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggtgtagaactatgaaaaatgcaggtggcagataatgtgttcttaggtcatcagtgcgg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 cggtgtagaactatgaaaaatgcaggtggcagat-atgtgttcttaggtcatcagtgcgg 443

                                                                       
Query: 61  ctctggattttagctttgtcatccagggctcatgcggtctctgctttcctaacctcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctctggattttagctttgtcatccagggctcatgcggtctctgctttcctaacctcaagg 383

                                                                       
Query: 121 cagatggcctggacaagccaggtaagtagggcaaggtggaggaagtaggggaaaggaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagatggcctggacaagccaggtaagtagggcaaggtggaggaagtaggggaaaggaagc 323

                                                                       
Query: 181 gctcccccttccgggattgctacaggctccctcctttctcaagcgataactgttttctct 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gctcccccttccaggattgctacaggctccctcctttctcaagcgataactgttttctct 263

                                                                       
Query: 241 ttctccactaatttagtaggcttgtcatgagctttatggctgagttgcctactcatttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttctccactaatttagtaggcttgtcatgagctttatggctgagttgcctactcatttcc 203

                                                                       
Query: 301 agcgttttcagtgttagagctcgaacccaggacgttaagctaggcaagtgctcgtctcag 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agtgttttcagtgttagagctcgaacccaggacgttaagctaggcaagtgctcgtctcag 143

                                                                       
Query: 361 acccatccacgcagtttttgtgtttgttcctccaccttggcctaaattattgcaatacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 acccatccacgcagtttttgtgtttgttcctccaccttggcctaaattattgcaatacct 83

                                                                       
Query: 421 tatctgtttgcaaatgacttggaaatgattcagtagttagatgaatgaaattgctgctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  tatctgtttgcaaatgacttggaaatgattcagtagttagatgaatgaaattgctgctat 23

                             
Query: 481 gaa-ttttttttaatcaa 497
           ||| ||||||||||||||
Sbjct: 22  gaatttttttttaatcaa 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space:   442530
Effective search space used:   442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)