BAC Information

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BAC

Clone NameMSMg01-114B13
Chromosome13 (Build37)
Map Location 84,317,272 - 84,317,599
singlet/doubletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101
Downstream geneTmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114B13.T7 (MSMg01no114_b13.b1)MSMg01-114B13.TJ (MSMg01no114_b13.g1)
ACCAG326064AG326065
length1,140747
length of high quality
(start - end)
---330 (74 - 403)
definitionCHROMAT_FILE: MSMg01no114_b13.b1 PHD_FILE: MSMg01no114_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:42 2005CHROMAT_FILE: MSMg01no114_b13.g1 PHD_FILE: MSMg01no114_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACCAACGGGTTGTGCGCCCCTTCCATTCGTCTGGTCGCTTTCTTCGAA
TCCCTGGATTACCCCGCGTCGATCGCCTAACTAACCTACTAAATGACTCG
CGAACCCGCGAACAGAACGCACTTCTCCCATATAAATACATAAAAGGTAT
TATTATAAAAGAATACCGCGAACATATCCCACAGCGCTAGTACAGTTTAC
GGCCGACTCCTAGCAAGCCTATAGCTTCATATTCAATTGAACTACGCTCA
CCAAAGACCCCTCCAAAGTTGGCACGGGAGCAGCACCCTAAATAATACAG
CACCACAAATTATCGCGAAAAACCGCCCGCTGCGATAAAACACCCTCACT
GCGCACTTTTATCCGCCCCCACATCAGCTATAATACCCCCCCCACATATA
TCTCCGCCCCCTTTCACCAATTAACCTCTACTACCGCCCCACGCGTTTTC
GTATCCGCTTCTAAATAGTCCCACCCGTCGTCCCGTTTTCGCCCCCCCTT
TTTACGCCGTTATTCTCACATCGCACGCCCCCCCGCGTTTTTCCGCGCCC
TATACGTGTCGCACCCTTTTTACCGGCGTACCTATACCGCGGCCGCTCAT
TACCTATCCGTATCACATCAAGCGCCCGCGCCATATAGTACTCCTTCGCG
CCATTCTAAACACGCACGCGTAGCGTATTACCATAGGCGGCCGAATCCGC
AATTCCCTTCCATCCCCCCGTCGCCTTACCTATCCCCGCCCACCATCTTC
TTACTCGCCCCGCTACACACCCCCCGGGCCGTATTATATCCCGTCCCGCC
TTTATGCTAATTGCGTATTTCTAAGCCTCTTACCCGACCGCTTGCGCGNC
TCCGCCCCCAACGACCCGCTCGATTGTATCCCTTCCTCCCTTATCTACCC
TCCTCCACTGTTCCCACTATCCTCCCATACCGTTCTCATCCCCCTGTTAT
TAAATGGGGTCACCAGTCGGTCGGCATGACAGATATTAGTTACGCACCTC
ACGCGATAGTGTATCGGGCGCGGGACCACTGTATGCCTAGGGGTCTCGCG
CCTATCGATCACACNCGCCGCAAGAAGCCGGGCGAATTAAGATACGACTA
TCAGCGGACCGACACTCTTTATTCCGAACTTCGCTCCCTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTGCTAAAGGAGAGGAACCCAGAA
GTCTGACATCCCTTTTTAAGGTGGAGAAAAACAAATTCATCTGCCTATGG
TTCTCTGGTGACTTGCATATCAGGAGATTCATTAACTCCAAGTTCCCTGA
GGACTACTTAGTTACGCACATCTCTTGCTTTTTATTTAGACCCTGCCCTG
AGATCAGGAACTAGAATATGAACTTGAGGAGAGGGAACACTGAATCCCTA
TTCTCAATATGCCCACATTGAATAAATCTTATTTTCCTGATTTTTACCAT
GAGAGTGTGTGAGGGGGGGACAGGGAGGGAGGAAGGAGGGGGCGTCTTCN
NTGTNNNGTNNNCTCCCTGTGATGGTCAGAGAAGAGCTCTTGGATGAGGT
AACATTTACACAGACCCTACAGGAAGTATGTTACTAGAACCCCTTGGGGA
AAACTCAAGATACAGTACACACAGACGCAAAGCCTTCGCACATTTATCTT
GCTGGGCTCCCTAAGAATAGGGAGCAATCAGTGTCTAACATAAAACCATT
AACACGTTCACGTCCGTGCTGACTTTGGGAGGTGCCTGCCCCGGCCACTA
ACATACCCCCCACACCGTTTTGCCGGAACGAATCCCCTCCTTGGACTAGC
TCCTACCTCGTCAAAACTTCCCGCTCCCCAACTTTCCCCACTCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_b13.g1 MSMg01no114_b13.g1 CHROMAT_FILE:
MSMg01no114_b13.g1 PHD_FILE: MSMg01no114_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:42 2005
         (330 letters)



>mm_chr13_84317072_84317804
          Length = 733

 Score =  549 bits (284), Expect = e-161
 Identities = 317/328 (96%), Gaps = 3/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgctaaaggagaggaacccagaagtctgacatccctttttaaggtggagaaaaaca 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tttgtgctaaaggagaggaacccagaagtctgacatctctttttaaggtggagaaaaaca 260

                                                                       
Query: 61  aattcatctgcctatggttctctggtgacttgcatatcaggagattcattaactccaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aattcatctgcctatggttctctggtgacttgcatatcaggagattcgttaactccaagt 320

                                                                       
Query: 121 tccctgaggactacttagttacgcacatctcttgctttttatttagaccctgccctgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctgaggactacttagttacgcacatctcttgctttttatttagaccctgccctgaga 380

                                                                       
Query: 181 tcaggaactagaatatgaacttgaggagagggaacactgaatccctattctcaatatgcc 240
           ||||||||||| | |||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 381 tcaggaactaggagatgaacttgaagagagggaacactgagtccctattctcaatatgcc 440

                                                                       
Query: 241 cacattgaataaatcttattttcctgatttttaccatgagagtgtgtgaggggggg-aca 299
           ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct: 441 cacattgaataaatcttattttcctgatttttaccatgagattgtgtggggggggggaca 500

                                       
Query: 300 g-ggagggaggaaggaggggg-cgtctt 325
           | ||||||||||||||||||| ||||||
Sbjct: 501 gaggagggaggaaggaggggggcgtctt 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 733
Length adjustment: 9
Effective length of query: 321
Effective length of database: 724
Effective search space:   232404
Effective search space used:   232404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)