BAC Information

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BAC

Clone NameMSMg01-114D15
Chromosome13 (Build37)
Map Location 24,227,334 - 24,227,895
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneV1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D15.T7 (MSMg01no114_d15.b1)MSMg01-114D15.TJ (MSMg01no114_d15.g1)
ACCAG326160AG326161
length777741
length of high quality
(start - end)
---567 (77 - 643)
definitionCHROMAT_FILE: MSMg01no114_d15.b1 PHD_FILE: MSMg01no114_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:52 2005CHROMAT_FILE: MSMg01no114_d15.g1 PHD_FILE: MSMg01no114_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCCCACCCCCTGTGTCGCGCCACACACCCNTNCNCCACACANNNNNCC
CTCATAATGCGGCGGNAAAGAANACCATTCGCACCGCGGNGGAANNCCNN
TTTGCAGCACCAGGGGNGAGAGNNNAGGAGNNGAGGNNAGAAAGANNNAG
AGGTTNCCCCCCAAGGACCACGGCGNCCGGAACCNGGGAGANCCCAGCAC
CGGCGAGGGGAAGGGCACCCCCGCCCGGGACCCCCAACCACANCCCGCAC
ACAGNCCAAACAAACAGCACCGGAAGAAACCAAAACGCGTCCCCGACACC
CAGACCCGCGACCAGGCGCCCCCGCAGGCANCCCCCCCCACCCACAAGCC
ATCTTTTTTTTTTCAGCCACCACCCCCCCCCGGGAAGACTTGTCTTTTTT
CCCCCCCCCCCCCCGGCCAGAGCCCTGAGTATGATTCTGGCGGTCTCTCG
GGCTGACACCAAAGAAACCTCCCCTTTGTGGCGGCCTCTGCTTCCGAACC
AGCCTTCCTCTCGCCTAGTCACCCCTTATAATCGCCCGCCCCCACCCAAT
CCCCCCGTTTCCTACCCTACCCCTCGGGCTGCCCCACATAGACCCGCTGT
CCCCCACCGTTTCCCGCCCCCTCCGCACCCGACCTCTACCGCTATTTATC
CCCCCGCGTCACAACAATCGGTACGGCTTCGCTACGCACACCCGCCCCCG
TCCTTGTTTCTTCTTTCACCCGCCCGGATTCCTCCGGGGGCACCTCTTCC
CCACCCACCCTTTTCCCCCTCCCTCCT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCATCTTCGTCTCAACATTGATA
GATGAGGTCAGCGTAGGAGTCACTCTGCCTCTGGAGGGAACATTTGTTTT
CATTTGCTGTTGGAAATGTTTCCCAGGCTTGCTGAATAGGGCCTTTCATC
TTTCAATGTTAGGTATTTGATGAGGATTAATTATTCAACTGAGCTGAGGG
CACGGAGACAGCGTGGCTTTTTTACTTTCTGACAGGGATGCTGCCTTGTG
TGTAAAATGATTCCCTTGTAGCATTCACACAGAACCTCACGGGGTAACTT
CCGTCATCTTGAGTAGGGAGTGTGAAGGAAGGTGGAGGCTGAAACCAAAA
CTAGGTCTCATGGCAAGTAGCCTAAGAACGAGACCAGACTGAAAATAAAG
ACACAGGGCTGGAGTGTGGAGTTCACGGGGGCGTTGTCATTTCTGTAGGG
AAAACAGCCGTTCTCTCTGCCCGCTCTGTTAGAAGTGGCAGAGTGGGAAT
GAGGCAAAGTGGAAACTGGACACAGCACCTCCTATGGTCAGGGCAGCTGT
ATCAGGTTTGTTTGTAAGAGGCGGGGATCTGGCTGTATTTAGCGGCTGAC
AGGGCTGAGTCAGTACAGGGTCCCCAAGGAGGTGACCTTCAGAAGACAGG
CTAGCAGGGCACTGTTAATCATTAGGGAAATGTAAATTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d15.g1 MSMg01no114_d15.g1 CHROMAT_FILE:
MSMg01no114_d15.g1 PHD_FILE: MSMg01no114_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:52 2005
         (567 letters)



>mm_chr13_24227134_24228095
          Length = 962

 Score = 1000 bits (517), Expect = 0.0
 Identities = 553/567 (97%), Gaps = 5/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatcttcgtctcaacattgatagatgaggtcagcgtaggagtcactctgcctctggag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 762 tccatcttcgtctcaacattgatagatgaggtcggcgtaggagtcactctgcctctggag 703

                                                                       
Query: 61  ggaacatttgttttcatttgctgttggaaatgtttcccaggcttgctgaatagggccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggaacatttgttttcatttgctgttggaaatgtttcccaggcttgctgaatagggccttt 643

                                                                       
Query: 121 catctttcaatgttaggtatttgatgaggattaattattcaactgagctgagggcacgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 catctttcaatgttaggtatttgatgaggattaattattcaactgagctgagggcacgga 583

                                                                       
Query: 181 gacagcgtggcttttttactttctgacagggatgctgccttgtgtgtaaaatgattccct 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggcagcgtggcttttttactttctgacagggatgctgccttgtgtgtaaaatgattccct 523

                                                                       
Query: 241 tgtagcattcacacagaacctcacggggtaacttccgtcatcttgagtagggagtgtgaa 300
           |||||||||||||| |||  |   ||||||||||||||||||||||| ||||||||||||
Sbjct: 522 tgtagcattcacacggaa--t---ggggtaacttccgtcatcttgagcagggagtgtgaa 468

                                                                       
Query: 301 ggaaggtggaggctgaaaccaaaactaggtctcatggcaagtagcctaagaacgagacca 360
           ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| |||
Sbjct: 467 ggaaggtggaggctgaaaccaaaactaggtcttgtggcaagcagcctaagaacgagccca 408

                                                                       
Query: 361 gactgaaaataaagacacagggctggagtgtggagttcacgggggcgttgtcatttctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gactgaaaataaagacacagggctggagtgtggagttcacgggggcgttgtcatttctgt 348

                                                                       
Query: 421 agggaaaacagccgttctctctgcccgctctgttagaagtggcagagtgggaatgaggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agggaaaacagccgttctctctgcccgctctgttagaagtggcagagtgggaatgaggca 288

                                                                       
Query: 481 aagtggaaactggacacagcacctcctatggtcagggcagctgtatcaggtttgtttgta 540
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aagtggaatctggacacagcacctcctatggtcagggcagctgtatcaggtttgtttgta 228

                                      
Query: 541 agaggcggggatctggctgtatttagc 567
           |||||||||||||||||||||||||||
Sbjct: 227 agaggcggggatctggctgtatttagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 962
Length adjustment: 10
Effective length of query: 557
Effective length of database: 952
Effective search space:   530264
Effective search space used:   530264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)