BAC Information

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BAC

Clone NameMSMg01-116C14
Chromosome13 (Build37)
Map Location 96,445,656 - 96,446,156
singlet/doubletsinglet
Overlap geneIqgap2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r
Downstream geneF2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116C14.T7 (MSMg01no116_c14.b1)MSMg01-116C14.TJ (MSMg01no116_c14.g1)
ACCAG327611AG327612
length713715
length of high quality
(start - end)
504 (54 - 557)227 (134 - 360)
definitionCHROMAT_FILE: MSMg01no116_c14.b1 PHD_FILE: MSMg01no116_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:20 2005CHROMAT_FILE: MSMg01no116_c14.g1 PHD_FILE: MSMg01no116_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTCTCTTCCAGCCTTGTCTGAGTCTGTTAGTATAAA
TACTTCATGTATGTGATAACTAGAGACTTTCGTGTAACTTAGAGGAGGAG
GCAAACCCTGGGATATTACTGGGTCTCTTCTTATCAAAAGGAAGAAAATG
ATATATTCATCATATACACTTTGTATTTTAATGCATAATGATATGCATAT
GGGTAGATATGTTGTACATATTTAGAAATGTGCATGGTTAAAAAATTAAT
AGCTCATTCTGGAGAGAAACTAGTTGAAATAGTGACAGATACATAGATAA
GTCTAATTTTATGTGGAAACATATGAAATGATAAATGGTCAATTATAGAT
ACATCATATAATATCTTTGTAGAATGTAATATAAATACAGTAATCTCTAA
AGATTCGGAGTCACAACTGAGTGAAGTGCCTTCCTAGAGTAGCTATAGGG
CACTTGGTACTGTAAAGATGATTATATATCAATCACTGCTTTCAAGCATT
TTATATGGTGGCCAAATAGTACTGTTAATAGAATCCAGCTAATACTATAA
GAAGGGTTCCTTTTAGTGTTTGCTTTTGTCATGCAGAGTCTTGGTAAAAT
TAAGCTCTCAAGCATAAAACTGGGTGCTAAACTTGTCATTGGGTTCCATT
TCTGCCTGTTCCC
CCCCCCCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCTCAATTAGAACTG
TTCTGGCAGGGCACGAATCCTAGCACATGCGAGGCCGAGGGAGTGAGTCT
CTGAGATCGAGATCAGCCTGGTCTACAGAGTGAGCTCCAGGACAGCCAGG
GCTATACAGAAAAACCCTGTCTGGGGAAAAAAACCAACCAACCAACCAGC
CAACCGACCAAACGAACAAACAGAACATTAGAAAAAACTGTTCTGAAAAC
GCTTCATGGATATGCCCACAGGAATGTTTTTGTGATGATTCCAATCCAGT
CAAGTCGACCGCGAAGATCTACCACGATCCCCAAGAGAAAGGTAAATATA
TTCATGAAACAACTTGCGCCTTAGCACTCAAAGCAGCGTTATGCCTAATA
GCCCTAAATGGAAACAACTCAAAACGCCATCAACAGAAGAACAACTAATC
AAAACGAGAAGTGTCCACAATGAGATGGCACCTAGCAATGACTAGAAAGA
TCGAGTACTGAAGCCAGACATGGTAGCCTAGGCTGGCCGCAGACCTTGGC
TGAGGTATGGGAACGGCTTAAGCCTAGGAATTTGATAGTTCTGCCCCAGC
AGAACTAGAACCCATCTCATAACTAAACAGGCTGGGATATTACTCACTTT
CTACTTGCCTGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_c14.b1 MSMg01no116_c14.b1 CHROMAT_FILE:
MSMg01no116_c14.b1 PHD_FILE: MSMg01no116_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:20 2005
         (504 letters)



>mm_chr13_96445453_96446356
          Length = 904

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttctcttccagccttgtctgagtctgttagtataaatacttcatgtatgtga 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggaattctttctctttaagccttgtctgagtctgttagtataaatacttcatgtatgtga 645

                                                                       
Query: 64  taactagagactttcgtgtaacttagaggaggaggcaaaccctgggatattactgggtct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 taactagagactttcgtgtaacttagaggaggaggcaaaccctgggatattactgggtct 585

                                                                       
Query: 124 cttcttatcaaaaggaagaaaatgatatattcatcatatacactttgtattttaatgcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cttcttatcaaaaggaagaaaatgatatattcatcatatacactttgtattttaatgcat 525

                                                                       
Query: 184 aatgatatgcatatgggtagatatgttgtacatatttagaaatgtgcatggttaaaaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aatgatatgcatatgggtagatatgttgtacatatttagaaatgtgcatggttaaaaaat 465

                                                                       
Query: 244 taatagctcattctggagagaaactagttgaaatagtgacagatacatagataagtctaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 taatagctcattctggagagaaactagttgaaatagtgacagatacatagataagtctaa 405

                                                                       
Query: 304 ttttatgtggaaacatatgaaatgataaatggtcaattatagatacatcatataatatct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttttatgtggaaacatatgaaatgataaatggtcaattatagatacatcatataatatct 345

                                                                       
Query: 364 ttgtagaatgtaatataaatacagtaatctctaaagattcggagtcacaactgagtgaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttgtagaatgtaatataaatacagtaatctctaaagattcggagtcacaactgagtgaag 285

                                                                       
Query: 424 tgccttcctagagtagctatagggcacttggtactgtaaagatgattatatatcaatcac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgccttcctagagtagctatagggcacttggtactgtaaagatgattatatatcaatcac 225

                                
Query: 484 tgctttcaagcattttatatg 504
           |||||||||||||||||||||
Sbjct: 224 tgctttcaagcattttatatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)