Query= MSMg01no117_h21.b1 MSMg01no117_h21.b1 CHROMAT_FILE:
MSMg01no117_h21.b1 PHD_FILE: MSMg01no117_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:04 2005
(249 letters)
>mm_chr13_44814847_44815495
Length = 649
Score = 439 bits (227), Expect = e-128
Identities = 240/249 (96%), Gaps = 8/249 (3%)
Strand = Plus / Plus
Query: 1 gttggctatagctgtatttcagtggcagagagcttgccttgtaacacacacacacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gttggctatagctgtatttcagtggcagagagcttgccttgtaacacacacacacacaca 268
Query: 61 cacacacacacacacacacacacacacacacggaaccgggggagcaaactcaaaaaggca 120
||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 269 cacacacacacacacacacacac--------ggaaccaggggagcaaactcaaaaaggca 320
Query: 121 gaagacaagcatcatttgtaagatggatataagatctatatatatatactttctatttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagacaagcatcatttgtaagatggatataagatctatatatatatactttctatttca 380
Query: 181 aaatgtcttagcctagagatgatattcatgcaccttggttcatgaccttgggttccatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgtcttagcctagagatgatattcatgcaccttggttcatgaccttgggttccatct 440
Query: 241 cctattttc 249
|||||||||
Sbjct: 441 cctattttc 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no117_h21.g1 MSMg01no117_h21.g1 CHROMAT_FILE:
MSMg01no117_h21.g1 PHD_FILE: MSMg01no117_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:04 2005
(516 letters)
>mm_chr13_44899580_44900493
Length = 914
Score = 955 bits (494), Expect = 0.0
Identities = 510/516 (98%), Gaps = 2/516 (0%)
Strand = Plus / Minus
Query: 1 ccaatcatacaggcaacaagcaggaaggaactgtccagaccttcatactttgggtgctgt 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 714 ccaatcatacaggcaacaagcaggaaggacctgtccagaccttcatactttgggggctgt 655
Query: 61 aagttcccagacaaattaacaaaagctaaataaatcaagcaatacatgtatacaatgatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aagttcccagacaaattaacaaaagctaaataaatcaagcaatacatgtatacaatgatc 595
Query: 121 ctaaaccacaatgagttgaattaagaggagagagcttagagtggcaatttcccaggccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctaaaccacaatgagttgaattaagaggagagagcttagagtggcaatttcccaggccat 535
Query: 181 tcaggtaaatggtccttgcataaatattaaactaaattataaccctgtagtttttaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcaggtaaatggtccttgcataaatattaaactaaattataaccctgtagtttttaaatg 475
Query: 241 gaatggagataaacctgtatacatgtataggtaattaagtggaatataaggctttaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaatggagataaacctgtatacatgtataggtaattaagtggaatataaggctttaagac 415
Query: 301 ttagacaaggcagtaactagaaacttcatgagtagcccccaagaaagcaatagaaaagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttagacaaggcagtaactagaaacttcatgagtagcccccaagaaagcaatagaaaagcc 355
Query: 361 accgagccaggtaaacagctacagttcacaccacaacccccaaaccagaacactcacagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 accgagccaggtaaacagctacagttcacaccacaacccccaaaccagaacactcacagc 295
Query: 421 ccctgtgaatcagatgagtttttttttttcttttttacacctacagtgactttgtctctc 480
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 294 ccctgtgaatcagatgagttttttttt--cttttttacacctacagtgactttgtctctc 237
Query: 481 tcattaaattttattttcaagatggggggggggggg 516
||| ||||||||||||||||||||||||||||||||
Sbjct: 236 tcaataaattttattttcaagatggggggggggggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 914
Length adjustment: 10
Effective length of query: 506
Effective length of database: 904
Effective search space: 457424
Effective search space used: 457424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
