BAC Information

Click to search

BAC

Clone NameMSMg01-118H10
Chromosome13 (Build37)
Map Location 51,523,720 - 51,523,954
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3
Downstream geneShc3, Cks2, Secisbp2, Sema4d, Gadd45g, LOC100040321
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118H10.T7 (MSMg01no118_h10.b1)MSMg01-118H10.TJ (MSMg01no118_h10.g1)
ACCAG329331AG329332
length724758
length of high quality
(start - end)
237 (49 - 285)---
definitionCHROMAT_FILE: MSMg01no118_h10.b1 PHD_FILE: MSMg01no118_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:19 2005CHROMAT_FILE: MSMg01no118_h10.g1 PHD_FILE: MSMg01no118_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCGCGGAA
TTCTCTGAAGTCCCCGTGAGTTTGAGGGTAATAAGATTTATAGGAATCAA
CATTTCTCTTTTTAATTTTAATTCAAACATCTAATTATTGTTCCAGATTA
GAGGACAGATGTTATAGTTAGGGAAATCTTTTAGACACAGGGCACACTGC
AGAGGTTGCTCTTGGCAGCCGTGTTCTGGCCTGCCTTCCTTTTAAAGCAT
GTCTGAGTTCACAGGGGTTCGTCACGTCTTGTTACAATCACCATGTATGT
GATGGGACAACTCTCTCATATTTCACATACACCCGGTGAAACTGAGGCTC
ACTTCAGGCCACATCCTCCGCTAACACAATAGCTGTTCTAGTCATTCAGC
ATTTTTTACGCACCCGTGTGGCCTGCCTGTGTTTCGAGCCCCGCGTTTGT
TCCCAGACCTCCAAGCTCCTCCTCTTGTGCTTTTCCTGCTCTCTCCTGCT
TTTTTATATAATATCTGCCTGGCCATGGCACCTTTTCCCCCCATGACCTA
TTTTCCCCCTCCTGTTATGTACATTTCTCCCGCTGCGTCCTTTATTCCCC
TTCCTCCTTCCGTTTTTTGGCCCCCCCCTATGCCCCGTATGAACCCCCTG
GCTTCCTTCCCGTATCCTTGTTCCCCTCTTTATCCCCCTTTCTCTTCTTC
CGTCCCCTTTTTTCCCCTCTATCC
AATGATGTGTTAGTCCTGGTGGCCGCCTGTCTTCCCAATTTAGGTGACTT
ACAGAAGGATTCCCGCAACTCCGGTCAGGCAGATGGCTGCATCCTCCTGC
TCTGCACTCTAGCAAGTCCCCGTGAGACTGGCTGTCACCTGCTGTACAGT
CCATCCTGCTCGACCTTGTCTTGTGTGTTCTGTATGCATGCCCAGATCTT
CGAGCTCCTGTCTCTGCAAGTACGACTGCGTGTGTCTTACTTTATTTATT
AACTGGCCGTGTGCCTCATGCCTGTGTTGACGTTGCTGCCGAGCCGTCTG
AGCCCTCCCCTATTTTCCTCCTTTCCCCTCTTTATTTTTCTCCCCCCTCC
CTTCCCCTTTCCCTTCCTTCCTCCATCCATCTTCCCCTTCATACTCCTTT
TTTCACCTCTTCCTCCCCCCCATTTCCTCCCTCCCTCCATCCAACTTCCC
TTCCCATTTCCTTTTTTTCACCTTCCTTCTTCTCTAACTATTTTCTTATT
CACCTTTTTTCCCCTTACACTTTACCATCTCCCCTTTAAAATTCCTCCTC
TCCACCTTTTTTCTTCATCCCTCCTCCCCCCCCCTCTTCCTTTTTTTTTT
TATCCTCCCCCCCCCACCTTCCCCTTTCCCTTTTACCCTTCTCCCCACTC
CCCTTCCTCTTCAATCCCCTCCCCTTTTTTTATTCTCTTGTACATACCCT
TTTATTCTTTTACCCCCTTCCTTCCCGTCCATCCCATCCCACTTCCCATC
CTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_h10.b1 MSMg01no118_h10.b1 CHROMAT_FILE:
MSMg01no118_h10.b1 PHD_FILE: MSMg01no118_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:19 2005
         (237 letters)



>mm_chr13_51523520_51524158
          Length = 639

 Score =  377 bits (195), Expect = e-109
 Identities = 225/237 (94%), Gaps = 6/237 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctctgaagtccccg---tgagtttgagggtaataagatttataggaatcaacattt 57
           |||||||||||||  | |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aattctctgaagt--cagtgttgagtttgagggtaataagatttataggaatcaacattt 378

                                                                       
Query: 58  ctctttttaattttaattc-aaacatctaattattgttccagattagaggacagatgtta 116
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctctttttaattttaattcaaaacatctaattattgttccagattagaggacagatgtta 318

                                                                       
Query: 117 tagttagggaaatcttttagacacagggcacactgcagaggttgctcttggcagccgtgt 176
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 317 tagttagggaaatcttttagacacagggcagactgcagaggttgttcttggcagccgtgt 258

                                                                    
Query: 177 tctggcctgccttccttttaaagcatgtctgagttcacaggggttcgtcacgtcttg 233
           |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 257 tctggcctgcattccttttaaagcatgtcagagttcacaggggttcgtcatgtcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 639
Length adjustment: 9
Effective length of query: 228
Effective length of database: 630
Effective search space:   143640
Effective search space used:   143640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)