Query= MSMg01no118_k09.b1 MSMg01no118_k09.b1 CHROMAT_FILE:
MSMg01no118_k09.b1 PHD_FILE: MSMg01no118_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:34 2005
(558 letters)
>mm_chr13_40664585_40665543
Length = 959
Score = 957 bits (495), Expect = 0.0
Identities = 535/555 (96%), Gaps = 13/555 (2%)
Strand = Plus / Plus
Query: 5 gaattctaggaatgag-acataggaattccacagatgtgaggtccagattatggaaagga 63
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggaaggaggacataggaattccacagatgtgaggtccagattatggaaagga 264
Query: 64 acaagaagacttgtttgaggaagcagtaggaccaaaagagctgataaataaccctggaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaagaagacttgtttgaggaagcagtaggaccaaaagagctgataaataaccctggaag 324
Query: 124 caggaaatgggaaaaagtggaacacgcctctaaacgcagtttgttccacttgcattcctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggaaatgggaaaaagtggaacacgcctctaaacgcagtttgttccacttgcattcctc 384
Query: 184 accaactgtagaggtcacctagctacacaatgtgtcagcaggctcactctggcttgactg 243
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 385 accaactgtagaggtcacctagctacacaatgtgtcatcagactcactctggcttgactg 444
Query: 244 cagagaatacctttgacgtgtgggtgccaatggacagttgcctaagctagtttgcaggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagaatacctttgacgtgtgggtgccaatggacagttgcctaagctagtttgcaggaa 504
Query: 304 ttcagaggctgctttgtgtgtagctctaatcagtgttaattaccaacctcttcccgtggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 ttcagaggctgctttgtgtgtagctctaatcagtgttaattaccaacctcttcacgtggg 564
Query: 364 tctgtacaaggacatggtgggtgagctctgcacgtcagagcagaagccacatgcagacct 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 gctgtacaaggacatggtgggtgagctctgcacgtcagagcagaagccacatgcagatct 624
Query: 424 cactaccaccaccaccttctgaacttatacaaaaaaaaaaaaacacaaaaaaacaaaaac 483
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 cactaccaccaccaccttctgaacttatacaaaaaaaaaaaaa---aaaaaaa------- 674
Query: 484 atgaggtctgcccacacgcatctgtagatgaaaactgaaattcccaaagtgctaaaggaa 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 --gaggtctgcccacacacatctgtagatgaaaactgaaattcccaaagtgctaaaggaa 732
Query: 544 attatacacagctgt 558
|||||||||||||||
Sbjct: 733 attatacacagctgt 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_k09.g1 MSMg01no118_k09.g1 CHROMAT_FILE:
MSMg01no118_k09.g1 PHD_FILE: MSMg01no118_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:34 2005
(282 letters)
>mm_chr13_40809219_40809900
Length = 682
Score = 545 bits (282), Expect = e-160
Identities = 282/282 (100%)
Strand = Plus / Minus
Query: 1 ataacaatggtgggttaagaaaagagagaaagagaattcagatggaaagtgtattctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ataacaatggtgggttaagaaaagagagaaagagaattcagatggaaagtgtattctcag 423
Query: 61 aacgcaacgcagcaattgttttttaaagcggttatttattatttcctagagagactggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aacgcaacgcagcaattgttttttaaagcggttatttattatttcctagagagactggtt 363
Query: 121 aactgtaacgtagatgtaataaaataatgaggcgaatgaaccctaactgtacatactgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aactgtaacgtagatgtaataaaataatgaggcgaatgaaccctaactgtacatactgtt 303
Query: 181 gacagaaatgaaatgcacacatcgtcgtagcaggtgaagtgaagcattgtctatcaggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gacagaaatgaaatgcacacatcgtcgtagcaggtgaagtgaagcattgtctatcaggac 243
Query: 241 tgtttttcttggctgcatctcagattgtggggggtgggaggg 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgtttttcttggctgcatctcagattgtggggggtgggaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
