Query= MSMg01no119_f05.b1 MSMg01no119_f05.b1 CHROMAT_FILE:
MSMg01no119_f05.b1 PHD_FILE: MSMg01no119_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:26 2005
(525 letters)
>mm_chr13_17180949_17181871
Length = 923
Score = 909 bits (470), Expect = 0.0
Identities = 508/522 (97%), Gaps = 6/522 (1%)
Strand = Plus / Minus
Query: 6 aattcagctgtt-accccagactgctgaacctttgccatgttctctttgcttaaggcatt 64
|||||||||||| | | |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 723 aattcagctgttaattcaagactgctgaacctttgccatgttctctttgcttaagggatt 664
Query: 65 atgaagttatttcaatgagtaaaacaaaatttggatttctttcttcaaattccctggagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atgaagttatttcaatgagtaaaacaaaatttggatttctttcttcaaattccctggagt 604
Query: 125 tgtctgctgaaggtttttgcttcaaagtatgatgtttaacaggtatattgtgtggtgtac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgtctgctgaaggtttttgcttcaaagtatgatgtttaacaggtatattgtgtggtgtac 544
Query: 185 tagctagcatgcaccctgagaggttaattttgtaactatctattgctgaattatattaag 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 tagctagcatgcaccctgagaggttaattttgtaactatctattgccaaattatattaaa 484
Query: 245 ctttaatatatcttactcatcaatctgacattcaaggaggtcttgaagggattggcctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctttaatatatcttactcatcaatctgacattcaaggaggtcttgaagggattggcctct 424
Query: 305 tgatctgcttgacatcatgtgatgactcaaaagccaggggcataatgacctggcaagaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgatctgcttgacatcatgtgatgactcaaaagccaggggcataatgacctggcaagaat 364
Query: 365 cacgtgtagggcttcaatgccactgaaggt-ctaatcacacataggaaacatgctgcaag 423
||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 363 cacgtgtagggcttcgatgccactgaa-gtcctaatcacacataggaaacatgctgcaa- 306
Query: 424 ttgttgtcaggattcttggctggggtgtcactacaacacttaggatttctatgtatctgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 --gttgtcaggattcttggctggggtgtcactacaacacttaggatttctatgtatctgt 248
Query: 484 tcatgttcctcaaagtatggtagcaagcttctaaggcatggg 525
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcatgttcctcaaagtatggtagcaagcttctaaggcatggg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 923
Length adjustment: 10
Effective length of query: 515
Effective length of database: 913
Effective search space: 470195
Effective search space used: 470195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_f05.g1 MSMg01no119_f05.g1 CHROMAT_FILE:
MSMg01no119_f05.g1 PHD_FILE: MSMg01no119_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:26 2005
(611 letters)
>mm_chr13_17040000_17041010
Length = 1011
Score = 1141 bits (590), Expect = 0.0
Identities = 607/614 (98%), Gaps = 3/614 (0%)
Strand = Plus / Plus
Query: 1 tttagtcaccgccgttaaatctatatacaagtgctttttagagtgctacatgtttgaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagtcaccgccgttaaatctatatacaagtgctttttagagtgctacatgtttgaatt 260
Query: 61 gaggacaaagtgaactgacctcaaatattcctttcaaatagaggtgcttaaatttaaaat 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gaggacaaagtgaactgacctcaaatcttcctttcaaatagaggtgcttaaatttaaaat 320
Query: 121 aaaataatatagagaaagtaaatctaatataaaatctgtgccctctaagttccaccaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaataatatagagaaagtaaatctaatataaaatctgtgccctctaagttccaccaggt 380
Query: 181 ctggtaatttgcaccggaaaaaaaaa---tctgaaaaattttaaaaagaaaatcgaggat 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ctggtaatttgcaccggaaaaaaaaaaaatctgaaaaattttaaaaagaaaatcgaggat 440
Query: 238 ggcatgtttttcctgtggtggggagggactatatttggggcacagaaaagcaactagtaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcatgtttttcctgtggtggggagggactatatttggggcacagaaaagcaactagtaa 500
Query: 298 gttatgtgatgtaacctataaagcatagctccttaaaggacaaattttgtattgatttcc 357
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gttatgtgatgtaacctataaagcatagctccttaaaggacaaattttatattgatttcc 560
Query: 358 atgtaaataaactggcttgttcctgctgagcaagtatgcagattgctatatttcttcaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtaaataaactggcttgttcctgctgagcaagtatgcagattgctatatttcttcaaa 620
Query: 418 tcttgacagctgagaaaccaagatagattataaaatattcactaattcaaagaacaagca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 tcttgacagctgagaaaccaagatagattataaaatattcactaattcaaagaccaagca 680
Query: 478 ggagtgagtaggtcctgggcttgtcaaatagcagctgatggatatagcaattcccctggt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagtgagtaggtcctgggcttgtcaaatagcagctgatggatatagcaattcccctggt 740
Query: 538 ttgatcattatagaacaccagcatttgaacattgtatcatctctttgtgctccataacta 597
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 ttgatcattatagaacaccagcatttgaacattgtatcatctctttgtgttccataacta 800
Query: 598 tttattgtatcgca 611
||||||||||||||
Sbjct: 801 tttattgtatcgca 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
