BAC Information

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BAC

Clone NameMSMg01-119N19
Chromosome13 (Build37)
Map Location 114,927,100 - 114,927,309
singlet/doubletsinglet
Overlap geneArl15, A430090L17Rik
Upstream gene1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119N19.T7 (MSMg01no119_n19.b1)MSMg01-119N19.TJ (MSMg01no119_n19.g1)
ACCAG330377AG330378
length740710
length of high quality
(start - end)
211 (46 - 256)518 (74 - 591)
definitionCHROMAT_FILE: MSMg01no119_n19.b1 PHD_FILE: MSMg01no119_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:08 2005CHROMAT_FILE: MSMg01no119_n19.g1 PHD_FILE: MSMg01no119_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATGGGCGGAA
TTCATAGTGGTGTCCATCAGAACTGAAGAGAATTCATTAAGATCCTAGCA
TTAAAACGCCATGGAGTAAAGAGACTGTGTAGCCTCCGGCAGGCTGAACC
TGACGTCATATGAAGACCATGCAACACCCTATGAAGAACGATCCCTTTGA
GTGATCTTCTCTCAACCTCCCTCCTTGCAAAAGGCAGTCTGACAGATCAG
AGGCTGGGGGTGGGGGGCGGTGGGCTTCCTTCTCCGTTCTCGTTCCCTTT
ATCCACCTCGTTCCCGCCTTTTTTTTTTCCTGCCCTCCCTCTCCTTATAT
GCTTTCCTTTTTACCTTCCTTTCCCTCCTTCCTTTGCCTTCCTTACCTCT
TCCCCTCCACCTTTCCTCTTCCCTTTTTTTTCCCTCACTTCTCCCCCTTT
CTTCTCATCCTTTTCTCCCTTTCGCCCTTGTTTTCTCCCTCTACTTCTTT
TTTCCCCTTTCTTCCTTTTCCTTATTTCCCCCTTTTTCCTCCTTTTTCCT
CTTTCCCCCTCCCCTTGCCTTCTCCCTTTCCTTTTCCCCTTTCCCCCTTT
CTCTCTTTTTCCCCTCTTCTTTTTCCCTCTCTCTTCCCCCCTCCCTTCTC
CTTCTTTTCCCCCTTTCTCCCTCTTTCCCCTTTTTTCCTCTCCCCCTTTT
CTCCTTTTTTCGCCCCGCCTGCTTTTCCCTTTCCCCCTTT
TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGGAAGAAGGAATAATGTTGGTAGC
CTTTGATAGGAAACTTAACATTGGGATAAGGGCTGAAGAGCTATCTCAGT
GGTTGAACATGCACTATTCTTACATACCGGACATAGGGCGAGACACAAAG
GCTGTAAGTCCAGCTCCCAGAAATCAGATGTCCTCTTCTGGGGACTTAAT
TTACTTGTTCACCCATGTGCACACACACATGCACATATTCACATAATTAA
AAATAGCACAAAGAAATCTGACCCAGACAATAGTATCATATAGAAATGGT
TAATTGCTGGTTGTTTTGTTTGTTTGTTTGTTTTCATTCTTAGAGACTGG
GTTTCTTTGTATAGCCTTGGCTGTCCTGGATCTAGCTCTGTAGACCAGGC
TGGCCTTCAACCCTGCTTGAGATCTACTTGCCTCTGTTCCTGAGTGAGAA
GTGCTTAATTTCTAAGCCAGCAGAGAAGTAAAAGTCAGAGTAAAAAAAAA
AAGTTTAATGAATCTATTAAATTACATACTTGGACATACACACATATGCA
TGCACATGTGCATACACACATACATACACACATGCACATGTGCACACACA
CATACACATTTATACCTATATATTATTTCACCAATAAATCTTAAATTGAA
GTATATCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_n19.b1 MSMg01no119_n19.b1 CHROMAT_FILE:
MSMg01no119_n19.b1 PHD_FILE: MSMg01no119_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:08 2005
         (211 letters)



>mm_chr13_114926899_114927509
          Length = 611

 Score =  377 bits (195), Expect = e-109
 Identities = 207/211 (98%), Gaps = 2/211 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcatagtggtgtcca-tcagaactgaagagaattcattaagatcctagcattaaa 60
           |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcatagtggtgtc-actctgaactgaagagaattcattaagatcctagcattaaa 260

                                                                       
Query: 61  acgccatggagtaaagagactgtgtagcctccggcaggctgaacctgacgtcatatgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 acgccatggagtaaagagactgtgtagcctccggcaggctgaacctgacgtcataagaag 320

                                                                       
Query: 121 accatgcaacaccctatgaagaacgatccctttgagtgatcttctctcaacctccctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatgcaacaccctatgaagaacgatccctttgagtgatcttctctcaacctccctcct 380

                                          
Query: 181 tgcaaaaggcagtctgacagatcagaggctg 211
           |||||||||||||||||||||||||||||||
Sbjct: 381 tgcaaaaggcagtctgacagatcagaggctg 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)