BAC Information

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BAC

Clone NameMSMg01-119O03
Chromosome13 (Build37)
Map Location 111,465,479 - 111,465,653
singlet/doubletsinglet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119O03.T7 (MSMg01no119_o03.b1)MSMg01-119O03.TJ (MSMg01no119_o03.g1)
ACCAG330391AG330392
length711707
length of high quality
(start - end)
62 (102 - 163)177 (78 - 254)
definitionCHROMAT_FILE: MSMg01no119_o03.b1 PHD_FILE: MSMg01no119_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:09 2005CHROMAT_FILE: MSMg01no119_o03.g1 PHD_FILE: MSMg01no119_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTCAAGCAAATTTCGGTTTCACATAATTTGACAAGGGACAAGCTCAA
AAAGATCAATTAACCAATCTGTTATGTAAAACTTTAACCGTAAAGAATGT
AATTTTTGTTGAAGAGATGGCTCATCAATTAAGGATGCTCACTGCTCTTC
AAGAGGACCTGACTTCTGTTCCGACATCCACATAAGCTCGATCTGTAATG
TCCGGTTCAGTGGATCAGACGCTTTCTTCTGTGTCCCGCGATGACTTTTA
TGTATGCAGCAGAAACACATCTACACATACTACAATACAGCTCACTTATA
CTCCATAAAGAGAGGTATATAGAGAGAGAGAGAGAGAGACAGACACTTAT
ACCGATACAGATACAGATACAGACACCGAGATAGATACAGACACCGATAT
ACATAGAGATAGAAAGAGACAGAGAGAGAGAGACTGGTAAGAATAAACCT
AATCCGCCACACAATACACTATCGCCACACTCTGTGTCAATGCCGAATAA
CTATTTGACATTTACATCTTATGAGCCATTTCCCACCTTCCCCAACTGAC
CCTCTGGCCTTGGTTTACAGCCTTTTGCCACCTAGTTCAGCCAACAGACC
CATTCTTACGTATGGTACTGCCAGCCACGCATCATCCCAGATTTGCTATA
CTTTTATCCCC
ATGCACGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTACGGGTTTCCAAACTGGAGTTAGTTG
TATGTAAGTTGGACAGCGGGAAAGAGACAGAGAGGCACTGGCTCAAATTT
TAAGTATAGGACAGAGTATTGGTTTGAATATTGACTGTGACGAGAACTGC
ATCCTTTCAAGACCTCTATCTAAGGAGCCTCCCATAACTGACTCTTCCAG
TACAGGTGGTAGGAGCCCATGTGACAAATCCAATCAGTCATCAGATTAAA
CCACTTGAGCTGAGCCCATGCTATTTACGCGATAGTTTAAAAGACTCCGC
GAATAATACTATATGCAATATGGCCAGTGCAATTAGCCTTATCGCATGCG
ATGCTCACAAGGTCATAGTGAGAGAGAGATCTGTGATATGCTATACACTG
CCGTATTGATTACTATGATTACATTACCCTTAGATAGTGTCCCCGATATC
TGTATTCTATTGACTGTTCAGACCATAGGAGCCCCCGATCTGAGCTAATT
CCATACCCCCTTTTTGATTTCTTGCCTTATTCCCATTTTATTCATAAACC
CCGATTTATGATTAGAGGATGACACACCCATATCCCCATTCCATGCTTCT
TACCACCTTTGACTACGTTCTTGTACTCTTGCCAACCCTCTCCCTTTCCC
TCTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_o03.g1 MSMg01no119_o03.g1 CHROMAT_FILE:
MSMg01no119_o03.g1 PHD_FILE: MSMg01no119_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:09 2005
         (177 letters)



>mm_chr13_111465279_111465855
          Length = 577

 Score =  308 bits (159), Expect = 2e-88
 Identities = 171/175 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtttccaaactggagttagttgtatgtaagttggacagcgggaaagagacagagaggca 60
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 201 ggtttccaaactggagttagttgtatgtaagctggacagtgggaaagagacagagaggca 260

                                                                       
Query: 61  ctggctcaaattttaagtataggacagagtattggtttgaatattgactgtgacgagaac 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggctcaagttttaagtataggacagagtattggtttgaatattgactgtgacgagaac 320

                                                                  
Query: 121 tgcatcctttcaagacctctatctaaggagcctcccataactgactcttccagta 175
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tgcatcctttcaagacctctatctaaggagcctcccataattgactcttccagta 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)