Query= MSMg01no120_a06.b1 MSMg01no120_a06.b1 CHROMAT_FILE:
MSMg01no120_a06.b1 PHD_FILE: MSMg01no120_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:19 2005
(359 letters)
>mm_chr13_54333498_54334256
Length = 759
Score = 613 bits (317), Expect = e-180
Identities = 343/357 (96%), Gaps = 10/357 (2%)
Strand = Plus / Minus
Query: 1 gttctggtgggggagatgtgtgcctcgcagcgatcacttcctgtgtgaatggcctggaga 60
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 662 gttctggtgggggagatgtgtgcct-gcagcgatcacttcctgcgtgaatggcctggaga 604
Query: 61 gaaccacccacacatgttaagctccttcctgttctttacctgtgtgccgtctttaccgat 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 603 gaaccacccacacatgttaagctccttcctgttctttacctgtgtg---------ccgat 553
Query: 121 tagctgtctctggaacactgatgacctaccgggtattctggaaggtctgcattgtctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tagctgtctctggaacactgatgacctaccgggtattctggaaggtctgcattgtctccc 493
Query: 181 agctcagctgaggtggtattctgaacggatccgcctgggtctgggctccacagcggttcc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agctcagctgaggtgggattctgaacggatccgcctgggtctgggctccacagcggttcc 433
Query: 241 ctaacatcctccgtgttcctaaaatccaccccaggctttggtaagacctgggatctgttg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 432 ctaacatcctccgtgttcctaaaatccaccccaggctttggtaagacctgggttccgttg 373
Query: 301 gacccccagcatcatcccatcctccctcctggtgtaagtaagtataccactgtctcc 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gacccccagcatcatcccatcctccctcctggtgtaagtaagtataccactgtctcc 316
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_a06.g1 MSMg01no120_a06.g1 CHROMAT_FILE:
MSMg01no120_a06.g1 PHD_FILE: MSMg01no120_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:19 2005
(554 letters)
>mm_chr13_54188419_54189374
Length = 956
Score = 1015 bits (525), Expect = 0.0
Identities = 548/557 (98%), Gaps = 6/557 (1%)
Strand = Plus / Plus
Query: 2 gaattctg-atgatcgaga-cagagagaaaaaccaagcgttccttgagttttccttggaa 59
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctgtatgatcgagaccagagagaaaaaccaagcgttccttgagttttccttggaa 261
Query: 60 ttttcttacggtgatttcagtctcttagaacggataggaataaaaggagaaaaaaaa--g 117
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 262 ttttcttacggtgatttcagtctcttagaacggataggaataaaaggag--aaaaaaaag 319
Query: 118 agtgcgcatttatggatggataacaaaccaaagcaataacaggaattgggctcccatcgt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtgcgcatttatggatggataacaaaccaaagcaataacaggaattgggctcccatcgt 379
Query: 178 taggatccaaagctaattaatatcccacagggctgtgttgcaatgacttcactgcttgag 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taggatccaaagctaatgaatatcccacagggctgtgttgcaatgacttcactgcttgag 439
Query: 238 ttcactcaaaaacagtatgtactgtatctatttctgatttagaaagttgttcaaatctgt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcactcaaaaacagtatgtactgtatctatttctgatttagaaagttgttcaaatctgt 499
Query: 298 acaggaacatagaaatcaacctcgcctttgagctggcatatccacccctcaaatctatca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acaggaacatagaaatcaacctcgcctttgagctggcatatccacccctcaaatctatca 559
Query: 358 ttattgaaaggtacatccgtgaggggtgaggggggcacttgtgttattttcccttcctgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttattgaaaggtacatccgtgaggggtgaggggggcacttgtgttattttcccttcctgt 619
Query: 418 ctatcacgggaggcttgaacctgttcgtggaatttaaaaataggcttatcagtgccaaaa 477
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 620 ctatcacgggaggcttgaacctgttcgtggtatttaaaaataggcttatcagtgccaaaa 679
Query: 478 aatgacacttgagtgggaaactgggtgaaggaggcacttgatctctctcaacagagtcct 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatgacacatgagtgggaaactgggtgaaggaggcacttgatctctctcaacagagtcct 739
Query: 538 ccttcgggatgctcccc 554
|||||||||||||||||
Sbjct: 740 ccttcgggatgctcccc 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 956
Length adjustment: 10
Effective length of query: 544
Effective length of database: 946
Effective search space: 514624
Effective search space used: 514624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
