Query= MSMg01no120_e05.b1 MSMg01no120_e05.b1 CHROMAT_FILE:
MSMg01no120_e05.b1 PHD_FILE: MSMg01no120_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:38 2005
(637 letters)
>mm_chr13_55683426_55684462
Length = 1037
Score = 975 bits (504), Expect = 0.0
Identities = 528/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 1 aggcatccttagcaccctggccctagccccatagatcctatgtacctcacaaaggtttaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 535 aggcatccttagcaccctggccctagccccatagatcttatgtacctcacaaaggtttaa 476
Query: 61 atggcccttatcccctctcccccaattaaatgagcttctcaatgaagcctgcctcccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atggcccttatcccctctcccccaattaaatgagcttctcaatgaagcctgcctcccaag 416
Query: 121 agtctgttctcttcagctcactcaactcctgaggtgtcagaatcccccagcctcactttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agtctgttctcttcagctcactcaactcctgaggtgtcagaatcccccagcctcactttc 356
Query: 181 tctctctgactgcctatgggtgattacagatgatcacaccattatggagactgagtgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tctctctgactgcctatgggtgattacagatgatcacaccattatggagactgagtgtgg 296
Query: 241 tcacaccattagtaagattgagggttgtcacaccattggggagattgaaggtggtcacac 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcacaccattaggaagattgagggttgtcacaccattggggagattgaaggtggtcacac 236
Query: 301 catttagagactggggcagtaagggggaatgacactgtggtggtttcaatatgcttggcc 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 catttagagactggggcagcaagggggaatgacactgtggtggtttcaatatgcttggcc 176
Query: 361 cagggagtggaactattaagaggtgtggccttgttggagtaagtgtggccttgtggtgtg 420
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 175 cagggagtggaactattaagaggtgtggccttgttgaagtaggtgtggccttgtggtgtg 116
Query: 421 tcactgtggttttgggctttttttattggatattttctttatttgcatttcaagtgttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tcactgtggttttgggctttttttattggatattttctttatttgcatttcaagtgttat 56
Query: 481 cccctttcccagttttcccccccctcctagaaactccttacccctatccctgcttc 536
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct: 55 cccctttcccagtttt-ccccccctcctagaaactccctacccctacccctgcttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_e05.g1 MSMg01no120_e05.g1 CHROMAT_FILE:
MSMg01no120_e05.g1 PHD_FILE: MSMg01no120_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:38 2005
(575 letters)
>mm_chr13_55542189_55543163
Length = 975
Score = 1069 bits (553), Expect = 0.0
Identities = 568/575 (98%), Gaps = 5/575 (0%)
Strand = Plus / Plus
Query: 1 cttaatcaggcctgcaagctcacttgggtgtctctctattctggtaatgggagaccccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaatcaggcctgcaagctcacttgggtgtctctctattctggtaatgggagaccccag 260
Query: 61 catggtggacttctgcagaatgaacactctgtatttacatactgtttgagtccaggctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggtggacttctgcagaatgaacactctgtatttacatactgtttgagtccaggctat 320
Query: 121 cattctttggctaatcgtggacccttagaggtttttattttaatattgataaccacatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattctttggctaatcgtggacccttagaggtttttattttaatattgataaccacatgt 380
Query: 181 ggctggtggctacaatactgagaaatgtggttcggggtaagagaggccatgtgtatggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctggtggctacaatactgagaaatgtggttcggggtaagagaggccatgtgtatggct 440
Query: 241 ggctgctagcttgcacggagcaaggggttgtagacagtggagggataaacagggcccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctgctagcttgcacggagcaaggggttgtagacagtggagggataaacagggcccaga 500
Query: 301 tgaagcagcacatttgaaggccatctggaagagactggagtctctttttattcactttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagcagcacatttgaaggccatctggaagagactggagtctctttttattcactttgt 560
Query: 361 tttttttttattattattattttgggcgcaggaaatgaaactggaagccttgtcacttag 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttttt-attattattattttgggcgcaggaaatgaaactggaagccttgtcacttag 619
Query: 421 caacttagactttgcaatgacatgtcatgttggctgcatgcattcttttggtctgaactc 480
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 cgacttagactttgcaatgacatgtcatgttggctgcat----tcttttggtctgaactc 675
Query: 481 attcaggcaatgctgccacattcaaggggtggggaagttagggtatgaatgcctttcagg 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 676 attcaggcaatgctgccacattcaaggggtggggacgttagggtatgaatgcctttcagg 735
Query: 541 tattaaggccagggacactttagaagttgttcagc 575
|||||||||||||||||||||||||||||||||||
Sbjct: 736 tattaaggccagggacactttagaagttgttcagc 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
