BAC Information

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BAC

Clone NameMSMg01-121I02
Chromosome13 (Build37)
Map Location 107,984,783 - 108,129,042
singlet/doubletdoublet
Overlap geneLOC100040350, LOC100040366
Upstream geneOlfr717-ps1, LOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
Downstream geneApoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121I02.T7 (MSMg01no121_i02.b1)MSMg01-121I02.TJ (MSMg01no121_i02.g1)
ACCAG331603AG331604
length679720
length of high quality
(start - end)		408 (50 - 457)368 (71 - 438)
definitionCHROMAT_FILE: MSMg01no121_i02.b1 PHD_FILE: MSMg01no121_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:18 2005CHROMAT_FILE: MSMg01no121_i02.g1 PHD_FILE: MSMg01no121_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,128,635 - 108,129,042)(107,984,783 - 107,985,150)
sequence
CAAGATCCGCGGAATTCTAGTTACGTGCCGCTACCCTAATGATAACCATG
GCCCTTTAATTTTATGTTAAGTGCTTAATCATAGGCCTTTAATTCTCCTT
ATTATGTTTTAAAAGGAAAATGCAAATGTTGCCTGTGCTGGCCTGCAAAC
AGCAGGAAAGAGATCTTTCAGGTTAAATTTCTCCTGAAAGGAAGGCTAGC
CCTTTGGTTTGCTCCTAGATTTCCTAGGAGCAAGCTCAGAAGTGCTGTTT
CCTTATAGATTTTGGCTTCTCAGCACAGCCTATAGAGCAACTGTGGGTTT
TCACCCTCTGAGTACCAGATCTTTTAAGGACACTTTGAAGGGGCTGCCTT
TCTATCGGTTGAATCTGAGAAGTGAGGAGGCACAAACACCTCCATTTCCA
AAGCACTTCTATAATGAAAACGCTGACCTTGTGGTAGGGAGGTAAGGTGA
GCATCCAACCCATGAAAACCAGCCACAGACTGCCAGGTTAGCTTTACAGA
AGTTACATCATAGAACGGTCACAGCTGATCGCCTAAGCAGAGGGAGAGGA
CTAATGCTTAAGCCTGAATACAGTGTTATTTGGAGGTAACACTTCCGGGT
AATTTCCCCTTTCCTCTTGCTTATTAACCTGGGGCTAGCAAATTGCGCCC
GAACTCACGGCGGCCGCAATAAACCAGTA

TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGATTGGAAAACCTTGGACAACGGTGTCATT
CGGTGTGTTTGATACGCGCAGCTCGGCCTCAGTAATCTATTTGCAAAATT
GTCCAATTTGAAAGTGACACATTTGATTCTCTTGACTTTCCTTTTTCTAG
CACAGTAAAATCTGAAGGAATTTGAGTGCTGGGCACTAGTGACAGAGGAC
AAAGGACAATAAAGGGATTCGTAAAGTACTCAGGAGAAAATTGTTGTTTA
TTATTAGTGCTGGGATTGAGGAAAGAGCTGCTTTTTAGAGCATACGTGAA
GTTCAACTTTTCCAAACAAAGGCACAGACTTCTGTGGGGAATCAAACTCT
TTCAAGGTTTCTTTTTATGTTAGCTGGCTAATTTAGATTTTCAATGTCTT
AACATAATTTGTCCCAATCATTTAAAGGGTGCCAAAGTCATTGAAGAAAA
TTCGAAAATTATAGCTACCATAAAAAAATAGGAAAACAAAAAGAAAATTG
ATTACCTGCAATTCTGCTGCCACTGAGCACCCATTATTCCTGTTTTGATA
TAATTCCTTCCCTTAAATTTTTCACCGCGAGTATAAATTATTGTTGGTAT
TCTAACAAAGGAAATAATTTGCACATGTAATGCAAATTTTTTTCTAAAAA
CTAAAAAAAAATTCCTTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_i02.b1 MSMg01no121_i02.b1 CHROMAT_FILE:
MSMg01no121_i02.b1 PHD_FILE: MSMg01no121_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:18 2005
         (408 letters)



>mm_chr13_108128435_108129242
          Length = 808

 Score =  758 bits (392), Expect = 0.0
 Identities = 404/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccctttaattttatgttaagtgcttaatcataggcctttaattctccttattatgttt 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 608 ggccctttaattttatgttaagtgcttaatcatagggctttaattctccttattatgttt 549

                                                                       
Query: 61  taaaaggaaaatgcaaatgttgcctgtgctggcctgcaaacagcaggaaagagatctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 taaaaggaaaatgcaaatgttgcctgtgctggcctgcaaacagcaggaaagagatctttc 489

                                                                       
Query: 121 aggttaaatttctcctgaaaggaaggctagccctttggtttgctcctagatttcctagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggttaaatttctcctgaaaggaaggctagccctttggtttgctcctagatttcctagga 429

                                                                       
Query: 181 gcaagctcagaagtgctgtttccttatagattttggcttctcagcacagcctatagagca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 428 gcaagctcagaagtgctgtttccttatagattttggcttctcagcacagcctatagggca 369

                                                                       
Query: 241 actgtgggttttcaccctctgagtaccagatcttttaaggacactttgaaggggctgcct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 368 actgtgggttttcaccctctgagtaccagatcttttaaggacactttgaaggggctgctt 309

                                                                       
Query: 301 ttctatcggttgaatctgagaagtgaggaggcacaaacacctccatttccaaagcacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttctatcggttgaatctgagaagtgaggaggcacaaacacctccatttccaaagcacttc 249

                                                           
Query: 361 tataatgaaaacgctgaccttgtggtagggaggtaaggtgagcatcca 408
           ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 248 tataatgaaaacgctgaccttgtgggagggaggtaaggtgagcatcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no121_i02.g1 MSMg01no121_i02.g1 CHROMAT_FILE:
MSMg01no121_i02.g1 PHD_FILE: MSMg01no121_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:18 2005
         (368 letters)



>mm_chr13_107984583_107985350
          Length = 768

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattggaaaaccttggacaacggtgtcattcggtgtgtttgatacgcgcagctcggcctc 60
           ||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct: 201 gattggaaaaccttggacaacggtgccattcggtgtgtttgatatgtgcagctcggcctc 260

                                                                       
Query: 61  agtaatctatttgcaaaattgtccaatttgaaagtgacacatttgattctcttgactttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaatctatttgcaaaattgtccaatttgaaagtgacacatttgattctcttgactttc 320

                                                                       
Query: 121 ctttttctagcacagtaaaatctgaaggaatttgagtgctgggcactagtgacagaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttctagcacagtaaaatctgaaggaatttgagtgctgggcactagtgacagaggac 380

                                                                       
Query: 181 aaaggacaataaagggattcgtaaagtactcaggagaaaattgttgtttattattagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggacaataaagggattcgtaaagtactcaggagaaaattgttgtttattattagtgc 440

                                                                       
Query: 241 tgggattgaggaaagagctgctttttagagcatacgtgaagttcaacttttccaaacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggattgaggaaagagctgctttttagagcatacgtgaagttcaacttttccaaacaaa 500

                                                                       
Query: 301 ggcacagacttctgtggggaatcaaactctttcaaggtttctttttatgttagctggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ggcacagacttctgtggggaatcaaactctttcaaggtttctttttatgttagctggtta 560

                   
Query: 361 atttagat 368
           ||||||||
Sbjct: 561 atttagat 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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