BAC Information

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BAC

Clone NameMSMg01-121O07
Chromosome13 (Build37)
Map Location 25,495,714 - 25,496,140
singlet/doubletsinglet
Overlap genenone
Upstream geneCmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
Downstream geneTpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121O07.T7 (MSMg01no121_o07.b1)MSMg01-121O07.TJ (MSMg01no121_o07.g1)
ACCAG331891AG331892
length687689
length of high quality
(start - end)
427 (47 - 473)485 (49 - 533)
definitionCHROMAT_FILE: MSMg01no121_o07.b1 PHD_FILE: MSMg01no121_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:49 2005CHROMAT_FILE: MSMg01no121_o07.g1 PHD_FILE: MSMg01no121_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCATTTCAAAGAGGAGCCGCGGAATTCTCAGCTTTTCTTTTGAGATG
GGGGCTAACTCTCACCCTAGCCTAGGGTTGGGCATATTATGTAGCATAAG
CCAACCTTGATTGAATTCACCACAATTCTCCTACCTCGGGTTCCTGAAGA
TTGTGTTCACAGATAAGCACTACTATGTTCAACTAGAAAAAAAGCCTTCA
TTTTCGATGTCATTGAGGGTTTGCTTGGCCTTTCACCTCATTAATTTATG
TAGTTATTGGTAATTACGTATTACCAATAATATCACATAGATTTTTGAAT
ATGGAACCAACTGAAAGTATGATTTCCTTAACCAGGTCTGGTGCTGCATG
CCTGTCACCTTGACATTCAGGAGCAGAGTTGAGGCAGTGCCAAGAATTTG
AGGTCAGCATTAACTACACAGCAAGATTTTGTATTACATACATATGCACC
ACATGTATGTAATAATCAGTGGAGGTTAGAAGAGACATAGGTTCTCTTGT
AGCTGGAGTTAGAGATGGTTGGTAGTCACAATGGGGGCTGGACACTGAAT
CTCAGGCCTCTACTTAAACAACAAGTGCTCATAACTGTTGATCCCTTGGT
CAATCTCCATACATAGGTTTAAAAGTCTTTTAAAAATTTGATTACGCGCA
TATAACCATATGTGGCGTTTGTGCACATGAGTGAAAT
TGGCGGCGCCTGCTCCCGAATGGAGGTGAACTATAGAAGTTTCGCGAAAT
TCAACAGTTAACACACTGTTGCTGTAGAAATGACATGCTTGAGTCATAGA
ACAGGAGAAATCAAGCTGGTACTGACATGGAAAATTCATCCCTACTGCTA
GCTTTTATAGAGCTAAAAGGGGAAGGTGCTATGCCTCATACCAGAAAAAA
AAAGTCATCAGTCTTACTCATCTTTGAACCCACTGAGCTGCAATAACAAC
TGGCCTAATAAGATGTGCCCTGCCAGTGCCTGACAAATACAGAAGTGAAT
GCTCATAGCCATCCAGTGGACTGAGAACAGGGCCCCCAATGGAGGAGATA
GAGAAAGGACCCAAGGAGCTGGAGGGGTTTGCAGCCCCATAGGAGGAACA
ACTATATGAACTAACCATTACCCACAGAGCTCCCAGGGACTACACCACCA
ACCAAGTACACAAAGAGGGACTCAAGGCTTCAGCCACATATATAGCAGAG
GATGGCCTTGTGGGACATCAACGAGAGGAGAAGCCCTTGGCTTTGTGAAA
GATAGATACCCCAGTGTAGGGGAATGCCAGGACAGGGAAGCGCCAGTGGG
CGGGTTAGTGAGCAGGGGGAGAGAGACGAGATAGGGGGCTTTTTGCCCTC
CCCCGCTTTCCCCCCTTTTTTTCTTACACACCCCACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_o07.b1 MSMg01no121_o07.b1 CHROMAT_FILE:
MSMg01no121_o07.b1 PHD_FILE: MSMg01no121_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:49 2005
         (427 letters)



>mm_chr13_25495513_25496339
          Length = 827

 Score =  735 bits (380), Expect = 0.0
 Identities = 416/428 (97%), Gaps = 2/428 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgggggctaactctcaccctagcctagggttgggcatattatgtagcataagccaacc 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 202 gatgggggctaactctcaccctagcctagggttgaacatattatgtagcataagccaacc 261

                                                                       
Query: 61  ttgattgaattcaccacaattctcctacctcgggttcctgaagattgtgttcacagataa 120
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 262 ttgattgaattcaccacaattctcctgccttgggttcctgaagattgtgttcacagataa 321

                                                                       
Query: 121 gcactactatgttcaactagaaaaaaagccttcattttcgatgtcattgagggtttgctt 180
           |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct: 322 gcactactatgttcaactag-aaaaaagctttgattttcgatgtcattgagggtttgctt 380

                                                                       
Query: 181 ggcctttcacctcattaatttatgtagttattggtaattacgtattaccaataatatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcctttcacctcattaatttatgtagttattggtaattacgtattaccaataatatcac 440

                                                                       
Query: 241 atagatttttgaatatggaaccaactgaaagtatgatttccttaaccaggtctggtgctg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagatttttgaacatggaaccaactgaaagtatgatttccttaaccaggtctggtgctg 500

                                                                       
Query: 301 catgcctgtcaccttgacattcaggagcagagttgaggcagtgccaagaatttgaggtca 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 catgcctgtcaccttgacattcaggagcagagttgaggcagcgccaagaatttgaggtca 560

                                                                       
Query: 361 gcattaactacacagcaagattttgtattacat-acatatgcaccacatgtatgtaataa 419
           |||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 gcattggctacacagcaagattttgtattacattacatatgcaccacatgtatgtaataa 620

                   
Query: 420 tcagtgga 427
           ||||||||
Sbjct: 621 tcagtgga 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)