BAC Information

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BAC

Clone NameMSMg01-122K01
Chromosome13 (Build37)
Map Location 66,991,120 - 66,991,918
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061
Downstream geneUqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122K01.T7 (MSMg01no122_k01.b1)MSMg01-122K01.TJ (MSMg01no122_k01.g1)
ACCAG332437AG332438
length9581,017
length of high quality
(start - end)		804 (53 - 856)804 (87 - 890)
definitionCHROMAT_FILE: MSMg01no122_k01.b1 PHD_FILE: MSMg01no122_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:18 2005CHROMAT_FILE: MSMg01no122_k01.g1 PHD_FILE: MSMg01no122_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGATGTTNNNNNGGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAAGACTGGTGATGCCTGTAAGGAAGATGGAGGAAAA
AGAACAAGGGAGGGATAACTTCCGGACTATACCTCACAATTGCAGACAAA
GAAGAAAACACACATTCAGAGGTCAGGGTCCCACAGGTTCTCCAGTGATA
TACAGGGGCCCAATATAGCAGCCTCCTACCAACATTGGTCCAGGTCCTGA
CTCTTAACCTTGAGACCGTGAGTAACCAGAATGGTTTTCAGAGCCCTAAT
CTGGGTGACCTTCCCTGATGATGGAGGGGAAGGATTGCATGATGACGAGA
ACAAAGAAAACAGACAAATAGATATGACAAATATGACAGAAGAGGGGACA
AAAGTCTCAGTGTGCTAAGCAGGGGACTCCCTCAGATGTAGCTCAAAGGC
CTTATGTCTGGATGTTATGTCTGGGATGGAAAAGGCATTTGGGAGCCAAC
CCCTGGTAACATCACCTAGGAAAATGGCCCCTATGTCAGGTACCAGGATG
AATCTAAACCAAAAGTGAAAATGAGCAGCCAGAAAAGATGGCTGCCACAT
ACTCAGCTACACAAAGACAGAGTAGAACAAAAAGATGGCCACCACATGCT
CCCTACAGCACACTCACCCAAAGACAAAGGACAAAAGGATGGCTGTTGCA
TGCTCATCCAAAGACAAAGAAGAACAAAAAGATGGCCGCTGCATATTCAC
CCTCAAACCAAAAAGAAACCAAAAGAGAGGTCAGACAGACAAAACAAAAA
AGACAGAAATGAGGTCCATGTGCACACCTTTGTGGGATCCGCAACATAAA
ACACTAAGGAGCCAACTCACCAAAGAAGCAAACGAAGGGGACACAACAGC
CACACCACAAGAAAGAAGAGCAGATCAGGTTTAAACCAAGAGCACAGTCC
TTTGCACA

NCCGTAAATCTTNNTAAACATGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATTCCAGTTAAAACCAGAGACA
CTGAAACTTATAGTTGACCTAATAGGGAAAAGCCTCAAAGATAAGGACAC
GGGAAAATTTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGA
ATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAACGCAAAGGA
CACTGTCAATAAGACAAAAAAGCCACCAACAGATTGGGAAAGGATCTTTA
CCAATTCTAAATCAGACAGGGGACTAATATCCAATATATACAAAGAACTC
AATTAGCTGGACTCCAGAAAATCAAATAATCCAACTTAAGAATGGAATAC
ACAGCTCAACAAAGAATTCACAACTGAGAGATTCTGAATGGCTGAGAAGC
ACCTAAAGAAATGTTCAACATCCTTAATCATCAGGGGAATGCAAATCAAA
ACAAACCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
CTCATGTGATAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TACATTGGTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAGTCAGTT
TGGCAGTTCCTCAGAAAATTAGACATAGTATTACCAAATGATCCAGCAAT
AACTCTCCTGGGCATATACCCAGAAGATGTTCCAACGTGTATAAGGAAAC
ATGCTCCACTATGTTCATTGCAGCCTTACTTATAATAGCCAGAAGTGGAA
AGAACCCAGAGGAATGGATACAGAAAATGTGGTACTTTTACACAATTGAG
TACTACTACTCAGCTATTAAAAACAATGAGAGCAGCAGCGGTGGCCATCT
TGGTTCCGGGACTCAGCAGAACTTAGGAAATTAGTCTGAACAGGTTAGAG
GGTGCGCCAGAAAAACCGGACAGCTTTCTGGGACGGGCGGAAAGCACAAA
ACCCGCTGAAGCCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_k01.b1 MSMg01no122_k01.b1 CHROMAT_FILE:
MSMg01no122_k01.b1 PHD_FILE: MSMg01no122_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:18 2005
         (804 letters)



>mm_chr13_66990916_66992118
          Length = 1203

 Score = 1524 bits (788), Expect = 0.0
 Identities = 797/800 (99%), Gaps = 1/800 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcttaagactggtgatgcctgtaaggaagatggaggaaaaagaacaagggagggat 64
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 gaattcttaagactggtgatgactgtaaggaagatggaggaaaaagaacaagggagggat 944

                                                                        
Query: 65   aacttccggactatacctcacaattgcagacaaagaagaaaacacacattcagaggtcag 124
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  aa-ttccggactatacctcacaattgcagacaaagaagaaaacacacattcagaggtcag 885

                                                                        
Query: 125  ggtcccacaggttctccagtgatatacaggggcccaatatagcagcctcctaccaacatt 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  ggtcccacaggttctccagtgatatacaggggcccaatatagcagcctcctaccaacatt 825

                                                                        
Query: 185  ggtccaggtcctgactcttaaccttgagaccgtgagtaaccagaatggttttcagagccc 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  ggtccaggtcctgactcttaaccttgagaccgtgagtaaccagaatggttttcagagccc 765

                                                                        
Query: 245  taatctgggtgaccttccctgatgatggaggggaaggattgcatgatgacgagaacaaag 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  taatctgggtgaccttccctgatgatggaggggaaggattgcatgatgacgagaacaaag 705

                                                                        
Query: 305  aaaacagacaaatagatatgacaaatatgacagaagaggggacaaaagtctcagtgtgct 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  aaaacagacaaatagatatgacaaatatgacagaagaggggacaaaagtctcagtgtgct 645

                                                                        
Query: 365  aagcaggggactccctcagatgtagctcaaaggccttatgtctggatgttatgtctggga 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644  aagcaggggactccctcagatgtagctcaaaggccttatgtctggatgttatgtctggga 585

                                                                        
Query: 425  tggaaaaggcatttgggagccaacccctggtaacatcacctaggaaaatggcccctatgt 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584  tggaaaaggcatttgggagccaacccctggtaacatcacctaggaaaatggcccctatgt 525

                                                                        
Query: 485  caggtaccaggatgaatctaaaccaaaagtgaaaatgagcagccagaaaagatggctgcc 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524  caggtaccaggatgaatctaaaccaaaagtgaaaatgagcagccagaaaagatggctgcc 465

                                                                        
Query: 545  acatactcagctacacaaagacagagtagaacaaaaagatggccaccacatgctccctac 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464  acatactcagctacacaaagacagagtagaacaaaaagatggccaccacatgctccctac 405

                                                                        
Query: 605  agcacactcacccaaagacaaaggacaaaaggatggctgttgcatgctcatccaaagaca 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404  agcacactcacccaaagacaaaggacaaaaggatggctgttgcatgctcatccaaagaca 345

                                                                        
Query: 665  aagaagaacaaaaagatggccgctgcatattcaccctcaaaccaaaaagaaaccaaaaga 724
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344  aagaagaacaaaaagatggccgctgcatattcaccctcaaaccaaaaagaaaccaaaaga 285

                                                                        
Query: 725  gaggtcagacagacaaaacaaaaaagacagaaatgaggtccatgtgcacacctttgtggg 784
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 284  gaggtcagacagacaaaacaaaaaagacagaaatgaggtccatgtgcacacctttgtgga 225

                                
Query: 785  atccgcaacataaaacacta 804
            ||||||||||||||||||||
Sbjct: 224  atccgcaacataaaacacta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 804
Length of database: 1203
Length adjustment: 10
Effective length of query: 794
Effective length of database: 1193
Effective search space:   947242
Effective search space used:   947242
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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