BAC Information

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BAC

Clone NameMSMg01-122K14
Chromosome13 (Build37)
Map Location 39,229,433 - 39,364,278
singlet/doubletdoublet
Overlap genenone
Upstream geneDsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
Downstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122K14.T7 (MSMg01no122_k14.b1)MSMg01-122K14.TJ (MSMg01no122_k14.g1)
ACCAG332462AG332463
length1,1261,148
length of high quality
(start - end)		760 (45 - 804)634 (118 - 751)
definitionCHROMAT_FILE: MSMg01no122_k14.b1 PHD_FILE: MSMg01no122_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:22 2005CHROMAT_FILE: MSMg01no122_k14.g1 PHD_FILE: MSMg01no122_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,229,433 - 39,230,188)(39,363,645 - 39,364,278)
sequence
TTTTAATGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTATGAGAATTCCTTTTATGAATTTAAAAAGAACTGCTAGGGT
TTTCTGAAACCTGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT
CCTTAGAGCAGGCTGGCCTCAGGCTAAGAGGTATGTTTGCCTCTGACTCC
CAAATTCTATAATTAAAAGGATATGCCCCTGCACATAGTTCACTGAGCGT
TTCTTGAATTCTGCCTGCTGTTGGACACTATGAGAGGCACTGAACACGGG
CTTGTCAATAAACATCCCAACTGTCATAGAACTCTAATGGAATGCAATTA
ATACTTATTCATATTTTCACTTTTGGAAAGTTTGTGGGTGAAGCGTCATC
TTGTGTTAGGAGTTTGTACATTATAACATAGTGTAACATTTAATTTTTGG
AAACACTTTGTTTCTACAATAACATAATTATTTCTTATAGTCTTTGCCTT
ATCAAGCACAAATTTAGTCTGTTGACTTTGAATTTTAGGTTATCATTGTT
CTACTTTAATAGATTTACACTTCTGAAAGTATTCAATTTGTTTGAACGTT
TTAGATGACTGTACAAAATACTTCAAAAGGTGAAACAAATATGGCCACTT
ATAAAAATTGGATAGATTAATTCCTGATCAGAGATGGAATCCAGACAACT
TAACAGTGAGTAGTGAAGATATGTTGAGTTCAGAGCTGCTTTTCTGCCTT
GCCTATGCTCTCTGAAGTTCACTCAATCTGTTTTTATTTTTATACCCCTC
TTTTCTTCTTCCATTTTCCATTCTCTTTCTTTCCCTTTCCCCCTTCCTTT
TTTCCTTCCTTCCTTCCCTTCCTTCCTTCCTTCCTTCCTTTCCCTTCCTT
CCTTCCCTTCTTTCCTTCCCTTTCTTTCCTTCCCTTTCTTTTCTTTCCCT
TCCCCCCCCCCCCCTTTTTTTTTTGAAGAAAGGTGGTGGTCCATTGGCAA
CTTTGGGTTATTGGGCCTGGGTAAGCNCTTAACCTCCAGGGGTACAAATC
CTCTTGGAATAAAAATTTAAATTGAAGTGTGCGCCTTGTGGATTGGGGTA
AAACTCCCTGTGTGGCCCTATACTGG

NTTTTAAAGAGGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTAAAAGAAAAGATGCATTCCACATTGTCTG
AAGGAGCCCTTAAGATGAGGTTCTCTCCCCAAGGAGCCGAACCTGTTAAA
CTCCAATTTTTACAGCTAGGGATAGGGGTCACAAATTGCAGGCACCCCTG
CCTATTAAAATGGCTCACCCACTAACCCTAGCTGGGATGGGAGCCCATTC
TCTTGGCTCAGGGAAAATTATCAAAGGCTGGGCCCCAGGGTGGCTAGTGG
AAGGTGACTGTCCGTCTAGTATCTGTCTGTCTGTCTGTGCCTCGTCTCCT
GGCTCCAAGTGTGCAGGTTCTGGTGTAATTCAGTAGTTTCCGAGCCCAGG
CTATTGAAGGAATCACTGCCAGACTTGATCGATAGTTTAATTGTAAACTT
TGGGGACAATAATGGATAATTTGGCTTGAACCGTCCATTATGAGCAGTGT
TCTCTAGGAGAAAACCTTCAAAATTAAACAAGAGCTGGGCTGCATTATTA
CATTTGTACAACTCACCCGGCGTTAAATAAATCCCCCTTCACAAATGCTG
CCTTGGCATTCCATGGAGTTCAAGAAACACGGGCAAGGCAGAGGCAAGAA
ACACAGAGAAGAGCAAACAGACCGCAGCAAGCACAGCTCGCACACTGGTT
TCACCCGGAAATGGAATCCCTGGTGTTTAACATAGCAGCTCTTCAGAGAA
CCAGAGCCCTCAAATCACGAACGAGTCTAAATGAGCAGAATGTGTTGTTG
CCTTCTGGGGAAGGTGGTTTTGTTGTAGTTTGTTTTATAAAGTAGGAATT
AAGGCAATGGAAAGTGAGAAACTCTTATATTCAAGGTTAGTTAGAGGGAA
AAGTGTGACCTCCCATCAGCCCAAATAATTTGAAAAGGTTTCTATTGCCA
TAATGTCCTAAAGGACCCGACCGGAAAATAAAATTCCCCCTAAAGGCTAT
TCAAAAGTTTTTCCTGGCCTGGGAGGAAACTCTTAATAAGAAAAATTAAT
TAAACAAACCGGGTGTGCCTTTTTTAAAAAACTTTTCCTGGCCTATAAAA
TATTTTATTTTTTCCACAAAAGATGAAGTGAAATAATAATAGCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_k14.b1 MSMg01no122_k14.b1 CHROMAT_FILE:
MSMg01no122_k14.b1 PHD_FILE: MSMg01no122_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:22 2005
         (760 letters)



>mm_chr13_39229229_39230388
          Length = 1160

 Score = 1384 bits (716), Expect = 0.0
 Identities = 746/756 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctatgagaattccttttatgaatttaaaaagaactgctagggttttctgaa 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctatgagaattctttttatgaatttaaaaagaactgctagggttttctgaa 264

                                                                       
Query: 65  acctggtttctctgtgtagccctggctgtcctggaactcactccttagagcaggctggcc 124
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagggtttctctgtgtagccctggctgtcctggaactcactccttagagcaggctggcc 324

                                                                       
Query: 125 tcaggctaagaggtatgtttgcctctgactcccaaattctataattaaaaggatatgccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaggctaagaggtatgtttgcctctgactcccaaattctataattaaaaggatatgccc 384

                                                                       
Query: 185 ctgcacatagttcactgagcgtttcttgaattctgcctgctgttggacactatgagaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgcacatagttcactgagcgtttcttgaattctgcctgctgttggacactatgagaggc 444

                                                                       
Query: 245 actgaacacgggcttgtcaataaacatcccaactgtcatagaactctaatggaatgcaat 304
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 445 actgaacacgggcttgtcaataaatgtcccaactgtcatagaactctaatggaatgcaat 504

                                                                       
Query: 305 taatacttattcatattttcacttttggaaagtttgtgggtgaagcgtcatcttgtgtta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatacttattcatattttcacttttggaaagtttgtgggtgaagcgtcatcttgtgtta 564

                                                                       
Query: 365 ggagtttgtacattataacatagtgtaacatttaatttttggaaacactttgtttctaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggagtttgtacattataacatagtgtaacatttaatttttggaaacactttgtttctaca 624

                                                                       
Query: 425 ataacataattatttcttatagtctttgccttatcaagcacaaatttagtctgttgactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 ataacataattatttcttatagtctttgccttatcaagcacaaatttagtctgttgagtt 684

                                                                       
Query: 485 tgaattttaggttatcattgttctactttaatagatttacacttctgaaagtattcaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 tgaattttaggttatcattgttctactttaatagatttacacttctgaaagcattcaatt 744

                                                                       
Query: 545 tgtttgaacgttttagatgactgtacaaaatacttcaaaaggtgaaacaaatatggccac 604
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtttgaacattttagatgactgtacaaaatacttcaaaaggtgaaacaaatatggccac 804

                                                                       
Query: 605 ttataaaaattggatagattaattcctgatcagagatggaatccagacaacttaacagtg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttataaaaattggatagattaattcctgatcagagatggaatccagacaacttaacagtg 864

                                                                       
Query: 665 agtagtgaagatatgttgagttcagagctgcttttctgccttgcctatgctctctgaagt 724
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 agtagtgaagatatgttgagttcagagctgcttttctgccttgcctatgctctctgaagt 924

                                               
Query: 725 tcactcaatctgtttttatttttatacccctctttt 760
           ||||||||||  ||||||||||||||||||||||||
Sbjct: 925 tcactcaatccatttttatttttatacccctctttt 960


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1160
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1150
Effective search space:   862500
Effective search space used:   862500
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no122_k14.g1 MSMg01no122_k14.g1 CHROMAT_FILE:
MSMg01no122_k14.g1 PHD_FILE: MSMg01no122_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:22 2005
         (634 letters)



>mm_chr13_39363445_39364478
          Length = 1034

 Score = 1156 bits (598), Expect = 0.0
 Identities = 625/634 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttctctccccaaggagccgaacctgttaaactccaatttttacagctagggataggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 aggttctctccccaaggagccgaacctgttaaactccaatttttacagctagggataggg 775

                                                                       
Query: 61  gtcacaaattgcaggcacccctgcctattaaaatggctcacccactaaccctagctggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gtcacaaattgcaggcacccctgcctattaaaatggctcacccactaaccctagctggga 715

                                                                       
Query: 121 tgggagcccattctcttggctcagggaaaattatcaaaggctgggccccagggtggctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgggagcccattctcttggctcagggaaaattatcaaaggctgggccccagggtggctag 655

                                                                       
Query: 181 tggaaggtgactgtccgtctagtatctgtctgtctgtctgtgcctcgtctcctggctcca 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tggaaggtgactgtctgtctagtatctgtctgtctgtctgtgcctcgtctcctggctcca 595

                                                                       
Query: 241 agtgtgcaggttctggtgtaattcagtagtttccgagcccaggctattgaaggaatcact 300
           |||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||
Sbjct: 594 agtgtgcaggttctggtgtaattcagcagtttctgagcccaggctatcggaggaatcact 535

                                                                       
Query: 301 gccagacttgatcgatagtttaattgtaaactttggggacaataatggataatttggctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gccagacttgatcgatagtttaattgtaaactttggggacaataatggataatttggctt 475

                                                                       
Query: 361 gaaccgtccattatgagcagtgttctctaggagaaaaccttcaaaattaaacaagagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaaccgtccattatgagcagtgttctctaggagaaaaccttcaaaattaaacaagagctg 415

                                                                       
Query: 421 ggctgcattattacatttgtacaactcacccggcgttaaataaatcccccttcacaaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggctgcattattacatttgtacaactcacccggcgttaaataaatcccccttcacaaatg 355

                                                                       
Query: 481 ctgccttggcattccatggagttcaagaaacacgggcaaggcagaggcaagaaacacaga 540
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctgccttggcattccgtggagttcaagaaacacgggcaaggcagaggcaagaaacacaga 295

                                                                       
Query: 541 gaagagcaaacagaccgcagcaagcacagctcgcacactggtttcacccggaaatggaat 600
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 294 gaagagcaaacagaccgcagcaagcacagctcgcatgctggtttcacccggaaatggaat 235

                                             
Query: 601 ccctggtgtttaacatagcagctcttcagagaac 634
           |||||||||||||| |||||||||||||||||||
Sbjct: 234 ccctggtgtttaacgtagcagctcttcagagaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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