Query= MSMg01no122_o18.b1 MSMg01no122_o18.b1 CHROMAT_FILE:
MSMg01no122_o18.b1 PHD_FILE: MSMg01no122_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:56 2005
(777 letters)
>mm_chr13_89165127_89166302
Length = 1176
Score = 843 bits (436), Expect = 0.0
Identities = 442/444 (99%), Gaps = 1/444 (0%)
Strand = Plus / Minus
Query: 334 catagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacaga 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 catagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacaga 1117
Query: 394 ggaatggatacaaaaaaatgtggtacatttacacaatggagtactactcagctattgaaa 453
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1116 ggaatggatacaaaaaaatgtggtacatttacacaatggaatactactcagctattgaaa 1057
Query: 454 agaatgtatttatgaaattcctaggcaaatggttggacctggagggcattatccttagtg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 agaatgtatttatgaaattcctaggcaaatggttggacctggagggcattatccttagtg 997
Query: 514 aagtaacccaatcacaaaaatttacttttacactgcttaaatgtcttttttacatacaaa 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 aagtaacccaatcacaaaaatttacttttacactgcttaaatgtcttttttacatacaaa 937
Query: 574 tgtttttcttaccttactctctaaaagtgattctatttttctaagattatattttcacca 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tgtttttcttaccttactctctaaaagtgattctatttttctaagattatattttcacca 877
Query: 634 accctttcttatcatttcttcttattcccccaacataatatttatcagtttttgtagagt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 accctttcttatcatttcttcttattcccccaacataatatttatcagtttttgtagagt 817
Query: 694 tattagttcacatatttgttggttggcctaatcattcatgttcctggggataatttaata 753
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tattagttcacatattt-ttggttggcctaatcattcatgttcctggggataatttaata 758
Query: 754 gtattttatattacataatgccca 777
||||||||||||||||||||||||
Sbjct: 757 gtattttatattacataatgccca 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1176
Length adjustment: 10
Effective length of query: 767
Effective length of database: 1166
Effective search space: 894322
Effective search space used: 894322
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_o18.g1 MSMg01no122_o18.g1 CHROMAT_FILE:
MSMg01no122_o18.g1 PHD_FILE: MSMg01no122_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:56 2005
(717 letters)
>mm_chr13_89034344_89035460
Length = 1117
Score = 1294 bits (669), Expect = 0.0
Identities = 705/721 (97%), Gaps = 8/721 (1%)
Strand = Plus / Plus
Query: 1 atgtaaaaaaaaaaaagaagaaaaagaag----ccttcttctgagtagatattactctgt 56
|||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 201 atgttaaaaaaaaaaagaagaaaaagaaggaaac----ttctgagtagatattactctgt 256
Query: 57 aaaatttaaaggtgttttataaaaacctgtttgcacatgtgtgtgtgagagagagaacat 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaaatttaaaggtgttttataaaaacctgtttgcacatgtgtgtgtgagagagagaacat 316
Query: 117 gtgcaaatatattatggacccagagttttggatcccaggtttgctgctgcttgaaaggac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgcaaatatattatggacccagagttttggatcccaggtttgctgctgcttgaaaggac 376
Query: 177 agaaacttcacagcctaatatctgagtgactattttagagtcttttttctcgtctatgaa 236
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 377 agaaacttcacagcctaatatctgaatgactattttagagtcttttttctcgtctatgaa 436
Query: 237 taaagacatgattttcctaactgtaattttttatgaattagcatgaagaattattttgta 296
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 437 taaagacatgattttcctaactgtaaatttttatgaattagcatgaagaattattttgta 496
Query: 297 actagaagcactatagaattgaatttagcccattttttgttattgaaaataggttttaca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actagaagcactatagaattgaatttagcccattttttgttattgaaaataggttttaca 556
Query: 357 taaaccattttatgattatggatttttctcccatatgcctctcagatccttcccatagtc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taaaccattttatgattatggatttttctcccatatgcctctcagatccttcccatagtc 616
Query: 417 tcacagtgatatctgtacccactttccccatcttttattagaaaacaaatacaaataaaa 476
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 617 tcacagtgatatctgtacccattttccccatcttttattagcaaacaaatacaaataaaa 676
Query: 477 taaaataagataaaataaaaacaaatttgaatgatagaaaataagcaaacagaagaaaaa 536
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 677 taaaataagataaaataaaaacaaatttgaatgatagaaaacaagcaaacagaagaaaaa 736
Query: 537 ggataaacacaaagaaaaacaaaacaaacccaaaacaacccacatgtaaatacagtgaca 596
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 737 ggataaatacaaagaaaaacaaaacaaacccaaaacaacccacgtgtaaatacagtgaca 796
Query: 597 cagacatttgtacacacagaaatctctttaaaacacagactcagatattgaaatataccc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cagacatttgtacacacagaaatctctttaaaacacagactcagatattgaaatataccc 856
Query: 657 atttgcttttattaaactaatgcctattaggtattttatattccccattggtgatgtttg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 atttgcttttattaaactaatgcctattaggtattttatattccccattggtgatgtttg 916
Query: 717 c 717
|
Sbjct: 917 c 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
