BAC Information

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BAC

Clone NameMSMg01-124J10
Chromosome13 (Build37)
Map Location 78,769,406 - 78,769,810
singlet/doubletsinglet
Overlap genenone
Upstream geneD13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneEG666883
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124J10.T7 (MSMg01no124_j10.b1)MSMg01-124J10.TJ (MSMg01no124_j10.g1)
ACCAG333902AG333903
length1,2711,244
length of high quality
(start - end)
409 (52 - 460)39 (261 - 299)
definitionCHROMAT_FILE: MSMg01no124_j10.b1 PHD_FILE: MSMg01no124_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:53 2005CHROMAT_FILE: MSMg01no124_j10.g1 PHD_FILE: MSMg01no124_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATTTTCTTNNNNGACATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAATCCATTTAAGACCTATTAAAGGTCTTCTGCTTAGT
TAATGTCAGTGGTACTCCCTTTGGAGTCCTTCCTTGTAATGAAAATAAAT
ACCATCCATCAGATATCAATAACTAGTTATTGATGATTTACCAGAAAGGT
GTGAGGCAAGCTCCTTCTTGGGGCTGAGAGCCTAAAGACCCCGTTGGCCG
ACCTGAAGCTCATCCAGACCAGCCTTCACAGTGTCAGGATTTTTATGGCC
AGTAGGGCTTGAGTTACCTTTGAGTAGGTTGACAAGGACACCCTGAGTAG
CCCAAAACTGTAATGACCATTCTCTGAAAACCCTCCTGTGACCCCCTCAG
CTCCCAGTCTCCCAGTCTCTGAGCCCACCCGTAGCAGTAACCATGGTTTT
CATGTGGCTGATTCTGCCACCCGCCTGAATTGTGAATAATAATACATTTT
TAAAGGATATTTTGCCTGGTCTATTTTGAATGATGTAGAATTTGCAAGAA
AAACTGCTTTTGTGGAATACTTAAGCAATGAAATAATGTAAAAAGTAACT
TTAGGTTTGTACGGCCATGGTTCTCTAACTGCGGGGCATTATCCTTTTTG
CTTTCCCTAGAAATTATACACAGAAGTTCTCAGGAGACTCAATTCTGGAA
AACCTATGAAAATGGAATTTATATCGAAAATAAATGAATTTGAACTAATC
ACTTACTGTGCTAATAAAAACTGACAAGTAAATTTACACCTCTCTTTTTT
ACCTGCTCTTGCATGCTTAGTTTGCAGTTCTTACAATAATCTAATTACAT
GTTTTTTCCGAATCATACTTAATACTTCTACCATTACTTAACATCTATTC
CCAAGAATGCCCAAAAAAGTTTGTCCTACCCACCTCTTTGCTATCTGGAT
GAATTCTTTCAATCCTGTGCAGTCTTTGATTCAATAGGTTCTTGAATTTT
AGCCTTCCTTTTGCCATACCCTCACCAATGGGTTTTCCTGTTTCACAAAA
ATTTCCCCATATTTTGTGATTTTTTTTGAATAATTTTTGCTAATAAGTTG
TATATTAATAATCTTCCTTTGTGTTCCTTATACTCTACTAAATTATATCT
TCCGCTAACTTTTTTTGTCCAATCTTTNATTTTATTTGTAATTTTCTCTA
TCTTTTAAAGTATACTTCTTGCTATAATCTCTTCATTATCACCTATACTT
CTCAGACACCACTTATTATTA
CAGTATATNCNAACAGATTGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXNGNGGGCCATTGAGGGTCCCGCNGNGAGNNGAGAN
NNNNNNNANNGNCCTTTAAAGAGCCCCGNNNAANANNAGNNGANNNNANG
NAGNAAAANAGAANAAGAAAGGGGAGAANNNNAGGACCCAGGNCAAGGCC
AGANCANAGNAANCCAGGGGGGGAAGGNNAAANAACNNANGGNANAGGNC
CCGGGGCANNCACACACACACACACACACACACACACACACACACAAAAA
AAAAAANAGGGGGGGGGGCNCANAGAGGANAGGCAGGGACAAGCCAGAGG
GNAGCCNGGGGGGGGGGNCNACAAGCNNCANCAACCANNNNGGGNGGAGA
CAATTTTTTTTTTNGCCAAGGAACNCGACNAAGNAAGANAGGGAAAAAGC
CCCGCGTTTTTTGTTTCGCAGACATGTACCATGGTGTTTGGAGAAAAAAA
GGGATTCCAGGGTTTCAGGATCAGGAACTTATGCTTATGAGAAAAGTTCT
CTACCAACTGAGCTGCCTGTCATTCATATAGTGTTTATTATAAAAATGAC
GTCAATGTTAGCTTCTTTACTTATTTTATGAAGCTAAGTCAGAATAAATT
AACAAGTGATGGATAAATGCATCTCTATATTCAAATTATAAAAACATAGN
ATGATTTATCTAGGCTGGGCATAAGTTTCCATGTAGGGGAAAAAGCTCAG
ATTAGGTGGGTTAAGGGCCTGTTTTTTTTTTTTTTATAGGAAGGGGAAAA
GGCCAAACTTTAAGGGCCGAAGAGGANAAGAAAANCCTTTAGGATTATTC
AGGGACTGGTTTTCTGAAGAGGTTCAATTTAATAAGGATTGGGTTTTAAA
GGTTGAAGGAAATAAGCGAAGAAAAGAAGCACAGGGGGGATTATGGGTGG
AGGGGGGAAAAACTATTAAAGGTGGAAACGTGGTCAAAAGCTCAGGGAAT
AATTAAGAATGGGAAAAATGGGGAGGGGAAGAACCNCATTGAATGGGTGG
GAGAAAGAAGGGTTAGATAGCGAAAAAAGGCAAATTTTTGGGGAAATGCC
GCTAGTTTGAGGGTGGGGAAAAAAAATGAAAATGGGGGGGATTAAATGGG
ATATTAGTATACCTTTCTAAAGGGTTGGTGGGGGGAATATCGAATTATTG
AGGGAAAAGGGGCGGACGGAAAGGGGATTTTTATGGGGGTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_j10.b1 MSMg01no124_j10.b1 CHROMAT_FILE:
MSMg01no124_j10.b1 PHD_FILE: MSMg01no124_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:53 2005
         (409 letters)



>mm_chr13_78769202_78770010
          Length = 809

 Score =  681 bits (352), Expect = 0.0
 Identities = 392/408 (96%), Gaps = 6/408 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaatccatttaagacctattaaaggtcttctgcttagttaatgtcagtggtac 64
           |||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||
Sbjct: 609 gaattccaaatccatttaagagttaggaaaggtcttctgcttagttaatgtcagtggtac 550

                                                                       
Query: 65  tc---cctttggagtccttccttgtaatgaaaataaataccatccatcagatatcaataa 121
           ||   |    || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcaaac---aggtgtccttccttgtaatgaaaataaataccatccatcagatatcaataa 493

                                                                       
Query: 122 ctagttattgatgatttaccagaaaggtgtgaggcaagctccttcttggggctgagagcc 181
           ||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctagttattgatgagatacaagaaaggtgtgaggcaagctccttcttggggctgagagcc 433

                                                                       
Query: 182 taaagaccccgttggccgacctgaagctcatccagaccagccttcacagtgtcaggattt 241
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taaagatcccgttggccgacctgaagctcatccagaccagccttcacagtgtcaggattt 373

                                                                       
Query: 242 ttatggccagtagggcttgagttacctttgagtaggttgacaaggacaccctgagtagcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttatggccagtagggcttgagttacctttgagtaggttgacaaggacaccctgagtagcc 313

                                                                       
Query: 302 caaaactgtaatgaccattctctgaaaaccctcctgtgaccccctcagctcccagtctcc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caaaactgtaatgaccattctctgaaaaccctcctgtgaccccctcagctcccagtctcc 253

                                                           
Query: 362 cagtctctgagcccacccgtagcagtaaccatggttttcatgtggctg 409
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagtctctgagcccacccgtagcagtaaccatggttttcatgtggctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)