BAC Information

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BAC

Clone NameMSMg01-125D06
Chromosome13 (Build37)
Map Location 74,934,984 - 74,935,378
singlet/doubletsinglet
Overlap geneCast
Upstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, LOC622204
Downstream geneEG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125D06.T7 (MSMg01no125_d06.b1)MSMg01-125D06.TJ (MSMg01no125_d06.g1)
ACCAG334355AG334356
length717702
length of high quality
(start - end)
393 (78 - 470)198 (151 - 348)
definitionCHROMAT_FILE: MSMg01no125_d06.b1 PHD_FILE: MSMg01no125_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:10 2005CHROMAT_FILE: MSMg01no125_d06.g1 PHD_FILE: MSMg01no125_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATAGGTTTTCTCACTCAGTTCCACCTTCAAGCTTTGCATGTGAA
ATGCAACATGATAAATTGTAGCAGGCATTTGCTACAATTCTTTGTCTTTT
GTCTACTCAAATCATAGTTAAAGTTAAGTTTTCCAAGATTGGGAATGTAG
CTCAGAGGGTAAATGTAGGGGTGGTTCTGATGCTAAGGTCCTGTTCCCCA
ACTGGTTCTTCATCTATCAGTAAAGATGCCATAGGCCAATTGCTGGGCAG
AAGGAATAGGCAGGACTTCCGGGTCCCTTCTTGCAAGCCAGCAGACAGAA
GAAGAGGAGAGAGAAGGAGTGTTCTTCCATGCTTACAGAGGGAGAAATGA
GAACAAGCCATGTGAGATCTCTGGCGGAGTAGCTATGAGGTGTTGTTCCA
GGAGAGGTTGGGGTTACAGCTGAGACTACTGGCAACTGAGTAACTGAAGC
GAGGGCAGATTAAGAAGTGATGAGCTAAAAGTATTGGGAAGGGCACACAA
GCCATCGCACATTAATAATGCCCAGCAATTGAGCCATAAGTCAGGTTGAC
ATTGGGCAACATATTCGGGCATGGTGGTACACGCCTTTAATCCCAGCATT
CGGTATGCACAGGCAGGTGGATTTCTGAGTTTGAAGCCTGCCTGTCCTTA
CGAGCGAGCTTCAGGAC
TCATTGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATAAAACATCTATTAAGTATTTTGCATCAATATTCAT
AAGGGAAATTGGTCAGAAGTTCTCTTTCTCTGTTGGCTCTCTGCGTAGCT
TAGGTATCACAGCAAGTGTGGCTTCATAGAGTGAGTTGGGTAGAGTACCT
TTCTGTTTCTATTTTGTGGAATAGTTTGAGGAGTATTGGAATTAGGACTT
CTTCGAAGGTCTGATAGAACTCTGCACTAAATCCATCTGGTCCTGGGCTT
TGCTTTTTTTTTTTTTTTTTTCTGTTTTGGAGTGTTTCTATTTCTTTAGA
TGATATAGTCAAGACTGTCAATCTGATCCTGATTTAACCTTGGTACTTGG
TATCTGCTTAGAAAATTGTCCATTTCAATTAGGTTTTCCAGTCTTGTGGC
GTATACGCACTTCGCAACCGGATCTGATGATTTTTTGGGATTTCCCCAGA
TTCAGTTGTCATATCTCCCTTCTCATTTCCGATTTTGCTACTCAGCAACT
GCCTCTGCGCCCTCTAGTTAGTACGGTTATGGGCTTATTCATCTTATTGA
TCTTCCTACAAAACTTTATTTTGGCTTGGCTGACTCATTGCCTATTTCTT
TTTGTTCTCCCTTTGTTGATTTCTTCGCCGACTTTGACTATTTCCTGTAA
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_d06.b1 MSMg01no125_d06.b1 CHROMAT_FILE:
MSMg01no125_d06.b1 PHD_FILE: MSMg01no125_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:10 2005
         (393 letters)



>mm_chr13_74934784_74935576
          Length = 793

 Score =  659 bits (341), Expect = 0.0
 Identities = 381/395 (96%), Gaps = 2/395 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccttcaagctttgcatgtgaaatgcaacatgataaattgtagcaggcatttgctacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccttcaagctttgcatgtgaaatgcaacatgataaattgtagcaggcatttgctacaa 260

                                                                       
Query: 61  ttctttgtcttttgtctactcaaatcatagttaaagttaagttttccaagattgggaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctttgtcttttgtctactcaaatcatagttaaagttaagttttccaagattgggaatg 320

                                                                       
Query: 121 tagctcagagggtaaatgtaggggtggttctgatgctaaggtcctgttccccaactggtt 180
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tagcttagagggtaaatgtaggggtggttctaatgctaaggtcctgttccccaactggtt 380

                                                                       
Query: 181 cttcatctatcagtaaagatgccataggccaattgctgggcagaaggaataggcaggact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcatctatcagtaaagatgccataggccaattgctgggcagaaggaataggcaggact 440

                                                                       
Query: 241 tccgggtcccttcttgcaagccagcagacagaagaagaggagagagaaggagtgttcttc 300
           ||| |||||||||  |||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tccaggtcccttcaggcaagctagcagacagaagaagaggggagagaaggagtgttcttc 500

                                                                       
Query: 301 catgcttacagagggagaaatgagaacaagccatgtgagatctctggcggagtagctatg 360
           |||||||||||||||||||| || |||||||||||||||||||||||| ||||| |||||
Sbjct: 501 catgcttacagagggagaaaagaaaacaagccatgtgagatctctggcagagtatctatg 560

                                              
Query: 361 aggtgttgttccaggaga--ggttggggttacagc 393
           |||||||||||||||| |  |||||||||||||||
Sbjct: 561 aggtgttgttccaggaaacaggttggggttacagc 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)