Query= MSMg01no125_j08.b1 MSMg01no125_j08.b1 CHROMAT_FILE:
MSMg01no125_j08.b1 PHD_FILE: MSMg01no125_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:40 2005
(537 letters)
>mm_chr13_19300711_19301646
Length = 936
Score = 882 bits (456), Expect = 0.0
Identities = 516/540 (95%), Gaps = 9/540 (1%)
Strand = Plus / Plus
Query: 2 ggaattcttcagagctttctag----tgccctccacgaaggaggtgacaggttgagatca 57
|||||||||||||| |||| |||||||||||||||||||| || ||||||||||
Sbjct: 202 ggaattcttcagag----ctagataatgccctccacgaaggaggtggcaagttgagatca 257
Query: 58 ccagatgtccttcttgtccccacttctggcagatgtggatgccactcccctagctgatgg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccagatgtccttcttgtccccacttctggcagatgtggatgccactcccctagctgatgg 317
Query: 118 gttgaaatcttaagctgcttgataggagggtagactgcaagttctaaggaccctatgatg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gttgaaatcttaagctgcttgataggagggtagactgcaagttctaaggaccctatgatg 377
Query: 178 ggccttaggggattgagagttgggggaagaaagttgggaagaagggaaatcaggctgctc 237
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 378 ggccttaggggattgagagttgggggaagaaagttgggaagaagggaaaccaggctgctc 437
Query: 238 tgggttgctctcaataaagtgttttatatgtcattaaaattcacatttatttttttgtat 297
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct: 438 cgggttgctctcaataaagtgttttatatgtctttaaaattcacatttgtttttt-gtat 496
Query: 298 ctatgtgaatatatgtgaatgtgcacatgccatagcaagcatgcagctttaggaacacat 357
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caatgtgtatatatgtgaatgtgcacatgccatagcaagcatgcagctttaggaacacat 556
Query: 358 acagagctggctctctcctaccatgtgggtttcagaaatcaaactagagtcatcggattt 417
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 acagagctgggtctctcctaccatgtgggtttcagaaatcaaactagagtcaacggattt 616
Query: 418 ggcaataaagtcctttacccactgagctattttactgtagtcactcttttgcattttaaa 477
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 617 ggcaataaagtcctttacccactgagctattttactgtagtgattcttttgcattttaaa 676
Query: 478 ttagcttataatttattaattaagacttctaataattctaatcctggtcctggaacaagg 537
|||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 677 ttagctcataatttattaattaagacttctaataattctaattctggtccaggaacaagg 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_j08.g1 MSMg01no125_j08.g1 CHROMAT_FILE:
MSMg01no125_j08.g1 PHD_FILE: MSMg01no125_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:40 2005
(182 letters)
>mm_chr13_19462641_19463221
Length = 581
Score = 329 bits (170), Expect = 7e-95
Identities = 179/182 (98%), Gaps = 1/182 (0%)
Strand = Plus / Minus
Query: 1 agatccaagtttctgttgcaaattatttacgttatttgcaggaagggaaatcagctaagt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatccaagtttctgtttcaaattatttacgttatttgcaggaagggaaatcagctaagt 322
Query: 61 cacctagaagcaactgatgtcagtctctaaagtcaatctattgtctggtagtaaaatgtt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cacctagaagcaactgatgtcagtctctaaagtcaat-tattgtctggtagtaaaatgtt 263
Query: 121 ttctcttagcatgagtgtgtatatctgattactcctgctaagtatgtgttcggtgtgttc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 262 ttctcttagcatgagtgtgtatatctgattactcctgctaagcatgtgttcggtgtgttc 203
Query: 181 ct 182
||
Sbjct: 202 ct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 581
Length adjustment: 8
Effective length of query: 174
Effective length of database: 573
Effective search space: 99702
Effective search space used: 99702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
