BAC Information

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BAC

Clone NameMSMg01-128A02
Chromosome13 (Build37)
Map Location 22,437,814 - 22,438,274
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21
Downstream geneV1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128A02.T7 (MSMg01no128_a02.b1)MSMg01-128A02.TJ (MSMg01no128_a02.g1)
ACCAG336389AG336390
length709720
length of high quality
(start - end)
465 (45 - 509)330 (73 - 402)
definitionCHROMAT_FILE: MSMg01no128_a02.b1 PHD_FILE: MSMg01no128_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:57 2005CHROMAT_FILE: MSMg01no128_a02.g1 PHD_FILE: MSMg01no128_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAAGTTCCTCCTAATATGTAATGTAGTTTGCTATACCTGACTGT
AATGAAGATTCTAAGTATACCTTGCTAAGCTTGCCCTGAGATATCTAACT
CTTATCTAGTAAAATACTGTAAGAAAGCATGCAAGACCCTCCACAATATC
ACAGGAACAAATCTGGGACATTCTAGCTACGGGAATGCCAAGGTTCCAGG
AGGCTAAATTTCCGTGAACCTCTTTGCCTCGTGACTGCCTCCAGGCTTTT
AGGCCTGCCAAGTGAGTCACTACTGTAGTGGATGTAGCATTAATGTACAT
AGACATAGGGTAAACCAGCATTCTAAATCCAGAATGTTTCATTACAAAAT
ATAACTCTCATGAATCTTGAACTGTATCTTTGAACTAACTGAGTGATAAT
CCTTAGGTATCAGGAATATGTGTGCCACTCCTGACTACTTGTTTCAAAAA
ACTATGACTTTGGTTTAAGAAAGTAACATTTTATTTATTTTTATGTACAT
TGGTGTTTTGCCCAAGCATGTGCTTGTAACGATGGTTGGAACCTCTGGAA
CATGAGTTATAGAGAGTACTATTGAGCTGCCACATGACTGCTGGCGAATT
GAACCTGAGTTCTCTGGGAGGAGTATCCAATGCTCTTAACCACTGAGCCC
TCCCTCTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAAAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAATCCAGATGCCCCCTCAACAGAGGATTGGATACAGAACATGT
GGTACATCTACACCATGTAGTACTACTCAGCTATTAAAAAGAATGAACTT
ATGAAAATCCTAGCCCAATGGAAGGACCTGGAGGGTATCTTCCTGAGTGA
GGCACACTTTTCTCAAAGTAATTCACACCCTATGCTCTCCCTGATAAGTG
GATATTACGCCACCCCCCAGGTTACCCCAGATTTTTTATACTTATTTCCT
AAACCCATGCTCCCCTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_a02.b1 MSMg01no128_a02.b1 CHROMAT_FILE:
MSMg01no128_a02.b1 PHD_FILE: MSMg01no128_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:57 2005
         (465 letters)



>mm_chr13_22437610_22438474
          Length = 865

 Score =  775 bits (401), Expect = 0.0
 Identities = 446/461 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaagttcctcctaatatgtaatgtagtttgctatacctgactgtaatgaaga 64
           ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcaccaactttctcctaatatgtaatgtagtttgctatacctggctgtaatgaaga 264

                                                                       
Query: 65  ttctaagtataccttgctaagcttgccctgagatatctaactcttatctagtaaaatact 124
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ttctaagtatactttgctaagcttgccctgagatttctaactcttatctagtaaaatact 324

                                                                       
Query: 125 gtaagaaagcatgcaagaccctccacaatatcacaggaacaaatctgggacattctagct 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 gtaagaaagcatgcaagaccctccacaatatcgcaggaacaaatctgggacattctagct 384

                                                                       
Query: 185 acgggaatgccaaggttccaggaggctaaatttccgtgaacctctttgcctcgtgactgc 244
           | ||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct: 385 atgggaatgccaaggctccaggaggctgagtttccgtgaacctctttgccttgtgactgc 444

                                                                       
Query: 245 ctccaggcttttaggcctgccaagtgagtcactactgtagtggatgtagcattaatgtac 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 ctccaggcttttaggcctgccaagtgagtcactactggagtggatgtagcattaatgtac 504

                                                                       
Query: 305 atagacatagggtaaaccagcattctaaatccagaatgtttcattacaaaatataactct 364
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atagaaatagggcaaaccagcattctaaatccagaatgtttcattacaaaatataactct 564

                                                                       
Query: 365 catgaatcttgaactgtatctttgaactaactgagtgataatccttaggtatcaggaata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgaatcttgaactgtatctttgaactaactgagtgataatccttaggtatcaggaata 624

                                                    
Query: 425 tgtgtgccactcctgactacttgtttcaaaaaactatgact 465
           |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 tgtgtgccactcctgactacttatttcaaaaaactatgact 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)