BAC Information

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BAC

Clone NameMSMg01-128G13
Chromosome13 (Build37)
Map Location 41,884,190 - 41,884,431
singlet/doubletsinglet
Overlap gene9530008L14Rik
Upstream geneEG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231
Downstream geneLOC100039272, Hivep1, Edn1, Hn1-ps4, Phactr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G13.T7 (MSMg01no128_g13.b1)MSMg01-128G13.TJ (MSMg01no128_g13.g1)
ACCAG336686AG336687
length714716
length of high quality
(start - end)
242 (75 - 316)334 (71 - 404)
definitionCHROMAT_FILE: MSMg01no128_g13.b1 PHD_FILE: MSMg01no128_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:29 2005CHROMAT_FILE: MSMg01no128_g13.g1 PHD_FILE: MSMg01no128_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAATTTGCGGCGCTATACGACTCCTATATCAAGAGAATCCGCGGAATTC
CTTAGTTTCTCGAAATAGATATGNAAACTCTGTTTCTACTTGAGTGAGGC
ATGGTATACTTGAGGATGCCTTAAGACAAGCACAGCGCCATGGTTAGAGC
ATCTGTTTTATTGAAGGACGCATAGCATCCATCATGGCTTCCATTGTGGC
TCAAAGGTAGACCTTTCAGTGGAGACTTTCACTGATCTCCGATTTCCTTG
GTTATTTCCATTGCTGGGTGTGCATTAGACAGCAACATTCCTGTAGCCAA
GGAGAGTTCAAAAGGTCATTGAAACTGGGGAGAAGTGTGGCTGAAGATGA
AAGGCAGAAGAGACACAGACACACTATCATGGAAGCCACCAGATTAATGA
GATGTGTTCACCCCAAAGGGAAGAAGACATGGTTGAAAATAGAAGCATCC
TTTCTCTGTGAATGAACATGATTGAAAGGCCCCTTGGGCAATGGTTAGTC
AGAGCTTGACACCGATAATTGGACTCCATATATAAGCCAAGGTTCCTACC
GAATGGTGGTGCGCGCCGTTATCTTGTACGTAATAATCGTACCCTTGTTC
ACAGTTTTCCCAGTAACAACCACTTCTTTTATGGTCTTCACCAAATCCAT
TACTTCTTCTGCCGACTGTTTATCTTGCCTGCCCTATTTTTCACACCATT
TTTTTGATACACCT
TTGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGCTAACCAGTGCTATGTAGAGAGACAT
TGTCTGATAAAAGAAAACCCGATTAATAATAATAATAACACTAATAATAG
ATATTAAGGGAAAACTGACAGAAATTTTAAAGAGTTAAGGAAAGTTCAGA
AAACATTTTTAAATTTATTTATTTTTATTTTATGTGCATTGGTGTTTTTC
CTGCATGTTTGTCTATATGAGGATGTCAGATCTTAGAATTACAGACAATT
CTGAGCTGTCACATGGTGTTGGTTATTGAACCTGTCTCCTCTGGAAGAGT
GGTCAATGTTCTTAACCACTGAGCCATCTCTCTAGCTCCAGAAATTCTTA
TGAGGATTCTCCACCCACAAATTTTCCTTTGTATGTAAATGTCTCATTAA
TCTTCGGATTCTCTTCTTTTCAAGCAGCCCTTCTTCAGCCCTTTACTGTG
CTCACTTGTATGACAACAGCTGTTTGATGACTGCTTCCTAGCCCTTGTAC
CTTCTTTCAGCTCCGAAATGACTGTTGCTCGTTGCCGTTTTGCTTTGCTT
TTGCTTTAACTAATGTGGCTTGTTCACCTTCCCACAGTGTTCCCCTTTAA
CATTTCGTGTTCCCACCTAGTGTCTTATCTTCCCTGCCTGGTGCATCTGT
TGTTTGTTTTTTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g13.b1 MSMg01no128_g13.b1 CHROMAT_FILE:
MSMg01no128_g13.b1 PHD_FILE: MSMg01no128_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:29 2005
         (242 letters)



>mm_chr13_41883990_41884631
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactctgtttctacttgagtgaggcatggtatacttgaggatgccttaagacaagcaca 60
           |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||
Sbjct: 442 aaactctgtttctacttgagtgagacatggtatacttgaggatggtttaagacaagcaca 383

                                                                       
Query: 61  gcgccatggttagagcatctgttttattgaaggacgcatagcatccatcatggcttccat 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acgccatggttagagcatctgttttattgaaggacgcatagcatccatcatggcttccat 323

                                                                       
Query: 121 tgtggctcaaaggtagacctttcagtggagactttcactgatctccgatttccttggtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtggctcaaaggtagacctttcagtggagactttcactgatctccgatttccttggtta 263

                                                                       
Query: 181 tttccattgctgggtgtgcattagacagcaacattcctgtagccaaggagagttcaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttccattgctgggtgtgcattagacagcaacattcctgtagccaaggagagttcaaaag 203

             
Query: 241 gt 242
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)