Query= MSMg01no128_i11.b1 MSMg01no128_i11.b1 CHROMAT_FILE:
MSMg01no128_i11.b1 PHD_FILE: MSMg01no128_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:39 2005
(528 letters)
>mm_chr13_104036782_104037709
Length = 928
Score = 922 bits (477), Expect = 0.0
Identities = 516/533 (96%), Gaps = 9/533 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactgagatcaccaccaggaccacatgtgaacatgttcaaaatctacaccattc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggaattcactgagatcagcaccaggaccacatgtgaacatgttcaaaatctacaccattc 256
Query: 64 cttgaactgaccttcaagaac-------cagaagtcatttaaactgcatatgggatttgg 116
|||||||| |||||||||||| |||||||| |||| |||||||||||||||||
Sbjct: 257 cttgaactcaccttcaagaacacccaaccagaagtcccttaa-ctgcatatgggatttgg 315
Query: 117 agagaaacactgaaaaaaccaacctgagtatcccccacagcggaggagcccagcaggaag 176
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agagaaacactgataaaaccaacctgagtatcccccacagcggaggagcccagcaggaag 375
Query: 177 gaacattgtagtcttgacacactgtaactcacttctggttatcctgacctaaataaaggc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaacattgtagtcttgacacactgtaactcacttctggttatcctgacctaaataaaggc 435
Query: 237 ccgtcttttaacctttgatcataacaatcaccacagggagtggtggctgacatgtgaagc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ccgtcttttaacctttgatcataacaatcaccacagggagtggtggctgacatgtgaagc 495
Query: 297 cagacacccttaaataggaagtgggtcagaggacaaatgtgaagtgtatttaattgtctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagacacccttaaataggaagtgggtcagaggacaaatgtgaagtgtatttaattgtctg 555
Query: 357 aagccttgacacccgccgacacaaagtaggtctctcctgcccctccccc-acacacacac 415
||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 556 aagccttgacacctgttgacacaaagtaggtctctcctgcccctccccccacacacacac 615
Query: 416 accctcacacatgacatagtgtccagctgtccagttttcctgttacttctgagtcactat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 accctcacacatgacatagtgtccagctgtccagttttcctgttacttctgagtcactat 675
Query: 476 taactaaccttcaataccactcaattaccccaaataactctaagttgagttaa 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taactaaccttcaataccactcaattaccccaaataactctaagttgagttaa 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_i11.g1 MSMg01no128_i11.g1 CHROMAT_FILE:
MSMg01no128_i11.g1 PHD_FILE: MSMg01no128_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:39 2005
(538 letters)
>mm_chr13_104175482_104176419
Length = 938
Score = 833 bits (431), Expect = 0.0
Identities = 446/451 (98%), Gaps = 1/451 (0%)
Strand = Plus / Minus
Query: 89 gtacatctgggacattattgcccaattcaggatcaaagatttac-tttttttccctttcc 147
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 938 gtacatctgggacattattgcccaattcaggatcaaagatttacttttttttccctttcc 879
Query: 148 taaaagttttatagttttacctcttctgtttagatctttgcattacttattgtgtttgat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 taaaagttttatagttttacctcttctgtttagatctttgcattacttattgtgtttgat 819
Query: 208 ctgaaatagagattccatttattcttgaatggcaacatctggttatttcgacatcattta 267
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 818 ctgaaatagagattccatttattcttgcatggcaacatctggttatttcgacatcattta 759
Query: 268 ttgaaaatacatttttttccttagtcaaactatcaggcatcagtactaaagactatagat 327
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 758 ttgaaaatacatttttttccttagtcaaactatcaggcatcaatactaaagactatagat 699
Query: 328 gaacgttcataccactccatgagcccagacatctgtgtgtacaatatctataggtacaat 387
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaacgttcataccattctatgagcccagacatctgtgtgtacaatatctataggtacaat 639
Query: 388 tgctatgatgtttttactactatggctttgtaatacattttaacagggctccttgttggg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgctatgatgtttttactactatggctttgtaatacattttaacagggctccttgttggg 579
Query: 448 agccatccagcaaggtttttgtgtgtgtgaggagggtggacctaacattttaatatgaat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agccatccagcaaggtttttgtgtgtgtgaggagggtggacctaacattttaatatgaat 519
Query: 508 tttacaatcatgaagtttctgtaacaacaac 538
|||||||||||||||||||||||||||||||
Sbjct: 518 tttacaatcatgaagtttctgtaacaacaac 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
