BAC Information

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BAC

Clone NameMSMg01-129I18
Chromosome13 (Build37)
Map Location 92,897,583 - 92,897,775
singlet/doubletsinglet
Overlap geneRasgrf2
Upstream geneAcot12, Zcchc9, Ckmt2, Rasgrf2
Downstream geneMsh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129I18.T7 (MSMg01no129_i18.b1)MSMg01-129I18.TJ (MSMg01no129_i18.g1)
ACCAG337529AG337530
length741724
length of high quality
(start - end)
137 (44 - 180)193 (121 - 313)
definitionCHROMAT_FILE: MSMg01no129_i18.b1 PHD_FILE: MSMg01no129_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:59 2005CHROMAT_FILE: MSMg01no129_i18.g1 PHD_FILE: MSMg01no129_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACA
TTTTCTATATCCATTCCTCTGCTGAGGGACATCTGGGTTCTTTCCAGTTC
TGGCTATTATAAATAAGGCTGCTATGAACGCAGTGGAGCATGTGTTCTTA
TTACATGTTGGAGCATCTTCTGGGTATGGCATTTAGTCATGTTTCTTTAC
TCTGTTCTAATTTAGAATAATCTGCCATGTTTTTTCATTTTTATGATCCA
GGACTTCTTTTGGAAGAATTCTTCTTGTATTACGGAATGGCTCACATTCT
GGCTTGATTTTTTTTTCTCCTCCCCCCCCCACAGTGCTAGGCAGTGTTGT
GCTGTTGTGTGTCTGCCCTTGGACAAACAATAATGTTTGTAGCGCGTGGT
TTTCTGCCTTGTATACACGTCCAGTATATCGCATTCCCCCTGACTGTCCT
GACGTCGCCAATATTTGTGTCTTATTGACCTCCCTGATAACCGCGCGATT
TTCTACGCGTGTCCTTCACCGTTTCACTCCTTAATACCGCTACGCCCTCT
GTATATACTCCTTTTTTTCTTCTTCCCACCCTTCATGTCACCGCCCGCTT
TTTTCCACTTACACTGTGCCCCATTTCCGCCGTTTCCCCCGCTTCCTCGC
CCAACCCCCTCCTCCCCCCCCTTTTGTCCCCTCCCACTATT
AATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGCCTTGGGAGTCAAGTTGGGAAGGTTAAAAT
GTCTGTCTAGTATCGACCCCGACAGAGAACTCACAGAACCTGTAGTCCCT
TTAACATTAAATCAGCACAAATATAAGAAACATGTATAACTCTTCATGCC
TCTAGAGCCAAGGATACCCATCCCTCACCAACCCCCACCAAGCAAGTGAA
AGCAGGGTGAATACAACAGCAGATGAAGAGGAAAGACAGCCATGTTGCTA
AACATCTTTCCTGCTTCATGTAAGATGGGTAAGGCTGCATAATTGGACCA
GACCATTTTTTTTGTGTCCCCCCCCACCGCAAACACTTAAAAACATCTCT
CCAGTGAAGTGAGACAATGTCACATGAAATTGTTTGTTTAGAAATATGCC
TCTCTTTCCTTTGAGTAAATGGTGTTATGAAGGTGCACTTCTCAAGATTC
CTCAACAGCCATTTGATTCGTTTTTAAACCCGAATAATCTAACCCGGATT
TCATGAACTACATCCCCCACCTTGTATCTCATCCCTTATCACATATCATT
AAGTTCAACCCCATAATAACTAACCCCCATTGTATTTACAAAGAGCCTTC
CCCAACAAGTCTTCTTCTTCATGCTTAGCCCTTATATGTGCGATCCGCAC
CTCCCCTTGTGTCACGCCCGCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_i18.g1 MSMg01no129_i18.g1 CHROMAT_FILE:
MSMg01no129_i18.g1 PHD_FILE: MSMg01no129_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:00 2005
         (193 letters)



>mm_chr13_92897383_92897975
          Length = 593

 Score =  342 bits (177), Expect = 6e-99
 Identities = 189/193 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagagaactcacagaacctgtagtccctttaacattaaatcagcacaaatataagaaa 60
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| 
Sbjct: 201 gacagagaactcacagaacctatagtccctttaatattaaatcagcacaaatataagaag 260

                                                                       
Query: 61  catgtataactcttcatgcctctagagccaaggatacccatccctcaccaacccccacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtataactcttcatgcctctagagccaaggatacccatccctcaccaacccccacca 320

                                                                       
Query: 121 agcaagtgaaagcagggtgaatacaacagcagatgaagaggaaagacagccatgttgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agcaagtgaaagcagggtgaatacaacagcagatgaagaggaaagacagccattttgcta 380

                        
Query: 181 aacatctttcctg 193
           |||||||||||||
Sbjct: 381 aacatctttcctg 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)