BAC Information

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BAC

Clone NameMSMg01-129M14
Chromosome13 (Build37)
Map Location 82,078,250 - 82,078,472
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129M14.T7 (MSMg01no129_m14.b1)MSMg01-129M14.TJ (MSMg01no129_m14.g1)
ACCAG337705AG337706
length813716
length of high quality
(start - end)
227 (46 - 272)249 (70 - 318)
definitionCHROMAT_FILE: MSMg01no129_m14.b1 PHD_FILE: MSMg01no129_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:19 2005CHROMAT_FILE: MSMg01no129_m14.g1 PHD_FILE: MSMg01no129_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCCTGTGAGGAGGGATTCCATAGTCTGGTCACCTGAACTGA
CCCAGTTCTCCACTTCTAAGTTTGTAAAGGGCAACATGCCCTGGGAAATT
ACGGGCTGGAGCATTCTGCATCCATCCGTACCACAAGAAGCACAAAAACA
GCTTAGTGAAATTGCTCAGTGTTTCAAATTTAAATAAATACAAGTTATAC
AGGGGTGGGGTGAGTGGGGGTGGGGACCCCCCCTTCTCCCTTTTCTTTCT
CCGTCTTCTCTATACAACAAAATTTTTTATCCCTGCCTCTCCCCCGTCAC
AAATATAACCACTATTTTTTTTTTTTCCCCCCCCCCCCCCCCCGCCCCGC
GCCTATTTTTTTCCTTTTTTCTCCCTCCCCCCCCCCACCATAAAAAAAAA
CACCTTCCTTCTGCCCGCGGGTTCTTTTCTCCCCCTCTTTTCCCCCCCAT
CTTTACTCACTCCCTATTCTCCCTCCCCCCTTTCCCTTTCACTCCCCCCT
TACTATCTCCTATTATCATCCCCCCTCCCCCCCCTTTTCTCCCCCCCCTT
TCTCTTCCCCCCCCACTCCTCCCCTCCTCCTTACTCTCCCTCCCTGTTCC
TCCCACACTCCCTTTTTTGGACCCCCCTTATTTTCCCTCTACCCCCCCCC
TTCTTTTCCCCTCTCCCTCATTTTCCTCCTCTTCATTTTTCGCCTTTTCC
CCCCTTATCCCCCCCTTCCCTCTCCCTCCCCGCTCCGTCCCCCTCTATCC
CCCCTCCCCCCCT
TATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTATGTAGGACAAGCTGGGACTCATGGAGA
CCTGCTTGCCTTTAAGTGTAGGGATTAAAGGTGTAAGGTGTAGATGCCAC
ACCTGCTGACATTTTATAAATATATCTATTTAAAGCTTCATTAAATGCCG
ATTTTACTTGAATGTATTTAATAAAATATTGTTTTTTTAAAAAAGAAAAG
GATACTAAAGACTGAAACAATCTCATAAAACAAACAGGAAATTTTCTGAA
GGACCTTTTCTTTCCAGGTGGTCCTCAGGAGTTGTGGCAAGGTTTGGGAG
AAGGCTCTGTTTTTCTGCCCCCCCCCCCCTCTTCAGGAATTTCTCACTTC
CATGACATCGGTACCCTTACCTGTACAGACTTTCTATTTCATCTCGAGTC
ATGAGCTCTTGTTTAAAACAAATACATCTTCTTGATTAACTACTTAAATA
TAGACAAACTATTTCATTTTTAGATATAGCCTACTAGGCCAAATGACTTT
TTAGTTTCTAAACTTCTTAATCACGGAAAATGAAAACATACAATTGTCCT
CCCACTTTGCAACACATCCTTGCAATATCCCTTTGATACATAGCAAGAGT
ACTTTCCATTATTTGACGTTGCACTTTTACTCCTGCTGAAAGATACCCCT
TATCTGCGACACCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_m14.b1 MSMg01no129_m14.b1 CHROMAT_FILE:
MSMg01no129_m14.b1 PHD_FILE: MSMg01no129_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:19 2005
         (227 letters)



>mm_chr13_82078046_82078672
          Length = 627

 Score =  400 bits (207), Expect = e-116
 Identities = 219/223 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgatcctgtgaggagggattccatagtctggtcacctgaactgacccagttct 64
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaatttctgatcctgtgaggagggattccatagtctggtcacctgaactgacccagttct 368

                                                                       
Query: 65  ccacttctaagtttgtaaagggcaacatgccctgggaaattacgggctggagcattctgc 124
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 367 ccactactaagtttgtaaagggcaacatgccctgggaaattatgggctggagcattctgc 308

                                                                       
Query: 125 atccatccgtaccacaagaagcacaaaaacagcttagtgaaattgctcagtgtttcaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atccatccgtaccacaagaagcacaaaaacagcttagtgaaattgctcagtgtttcaaat 248

                                                      
Query: 185 ttaaataaatacaagttatacaggggtggggtgagtgggggtg 227
           |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 247 ttaaataaatacaagttatacaggggtggggtaagtgggggtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)