Query= MSMg01no129_p14.b1 MSMg01no129_p14.b1 CHROMAT_FILE:
MSMg01no129_p14.b1 PHD_FILE: MSMg01no129_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:34 2005
(289 letters)
>mm_chr13_33071002_33071689
Length = 688
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%), Gaps = 1/289 (0%)
Strand = Plus / Plus
Query: 1 ttctgatcttacagtaaccccctgatataactggtagagcactcaggccctgagcaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgatcttacagtaaccccctgatataactggtagagcactcaggccctgagcaagga 260
Query: 61 agatagccccagacctctgatgctcaagcctggggcagccttgaattgtaactttgctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatagccccagacctctgatgctcaagcctggggcagccttgaattgtaactttgctcc 320
Query: 121 tatctggtacctttctgacatctggaggattcctagcatgtaagctaatttgtgtaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctggtacctttctgacatctggaggattcctagcatgtaagctaatttgtgtaaaga 380
Query: 181 gcttcttattaagtacttggtacggaatctttccttccaccacaccccaccctgctccca 240
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 381 gcttcttattaagtacatggtacggaatctttccttctaccacaccccaccctgcaccca 440
Query: 241 gctctaacaaaattcctataacatcaagaatttttttttttattccaga 289
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gctctaacaaaattcctataacatcaagaatttttttttt-attccaga 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no129_p14.g1 MSMg01no129_p14.g1 CHROMAT_FILE:
MSMg01no129_p14.g1 PHD_FILE: MSMg01no129_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:34 2005
(289 letters)
>mm_chr13_33192762_33193450
Length = 689
Score = 468 bits (242), Expect = e-136
Identities = 275/286 (96%), Gaps = 2/286 (0%)
Strand = Plus / Minus
Query: 5 agaggacaggagtgtggggaggctccatttcctctatgacttgtttccgcttccaggaag 64
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 489 agaggacaggagtgtggggaggctccatttcctctattacttgtttatgcttccaggaag 430
Query: 65 actaaaaaattgcattggtaattcagg-attctgaatgaggagtacaatataattatggg 123
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 429 actaaaaaattgcattggtaatt-tggaattctgaatgaggagtacaatataattatggg 371
Query: 124 ttgccctggggtgagtggttatgatgcagcagaaagggtctcaaatgttgagaagaagct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttgccctggggtgagtggttatgatgcagcagaaagggtctcaaatgttgagaagaagct 311
Query: 184 gatagtacagtgctgacttccagcctccagtacagcaagccaatccccagccccaagtat 243
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gacagtacagtgctgacttccagcctccagtacagcaagccaatccccagccccaagtat 251
Query: 244 gtgtgactgtttaatgaaatatactaagacccatagaatacagttt 289
||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 250 gtgtgacagcaaaatgaaatatactaagacccatagaatacagttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
