BAC Information

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BAC

Clone NameMSMg01-130A11
Chromosome13 (Build37)
Map Location 90,275,619 - 90,275,856
singlet/doubletsinglet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A11.T7 (MSMg01no130_a11.b1)MSMg01-130A11.TJ (MSMg01no130_a11.g1)
ACCAG337888AG337889
length716713
length of high quality
(start - end)
228 (69 - 296)238 (129 - 366)
definitionCHROMAT_FILE: MSMg01no130_a11.b1 PHD_FILE: MSMg01no130_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:38 2005CHROMAT_FILE: MSMg01no130_a11.g1 PHD_FILE: MSMg01no130_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAGCGCGGAAT
TCAAGGACATCTTTCTGCCAATATACCAAACCTTCAGCAGGTTATCTTTG
TTTTAATTAATATATTTTTGAAGCAAAATATAATAACATAATGCACTGCC
TTCCCTTTCCTCCCTCCAACACTTCTCATATATCTGCTTTCTGTCGCTCA
AAATTTGTAGTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTTTCTCCCACC
AACCCTCCTTCTGCCTCTTCTTTTTTTCCTCCTTCCCAAATCTTTATATT
CTACTCGATCTCTTTTTCTATCGCCCTTCTCCCGAACTTTATCTTGCATA
TCTCGATGTCGTGCTCCCCCCCAACCTTTTATTTCATCTGTACCTAGCAC
CAACAACAGCCTTATTTCCTTTTCCATGCTTTTTTTGACTGATTTTTTTC
ACTCACTCATATTTCCCTCTTCACATTTACACACCACTTTTATCACCTCC
TACCACCTTTTTTTTACACTACATTTATTTAAACGTATACTCCCCCCACC
TTTACACAAAATGTCGCCTCTTTACACCAACGCATTTCTTTTTTTCCTTT
TTAACCCCTTTCCCCACTTTTTACTCCTTTTTTTATTTGTATGCACCAGA
CTTGTTTCCACCTCCC
CGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCCGAATACATTCCCTGGGCACCCAGCCACATCACA
GAGAAAGCAGAAGTGGTCATTGCTCCCACAATACAGACACACAGCTCTCC
TAGCAAGGTATTACTAGGAACTATTCTGCACCATTAACATTGTTTGAGAA
TAGAGCCACTGGCATCCAAGCAGATACAGGGCATGATTTTGCTAGTGATG
GAAGATTTAAAATTAATGTGTCATGAGAAGCAGAACATGATTAAAAGTAG
TTGCTTCTAGGATGGCTTCTGAGTAAGATTCAATTTTACGTATATAGATT
CTAGAATTCAATCTATTTTCTACTCTCCCCACCACACAACTCAGGTTAGA
GTTGTCCAAGAGGGTTCTCACAGCATTGAAAAATCTTGCTCTTGTTTCCT
CTAGAGATGGAATGGAATTCCGTATTGCTGATCATACCATGTGCTTCAGA
CACAGGGCCAGAGGACCTGGAGCTAGAACTACTTTAATAACTTCTCCTTG
ATGATTGATTCTCATGTCACCAGAAAGTGCCATGCTAGCTTCCAAAGGAT
GGAAGCAGCCAACAGTCCTGCCCTGCCAGTTATGATGCCTATGACCACAA
CAATGCATGATAACCGTAGTGGCGTCACAGTGACACACGTACCTCAAGAG
TATCCCACTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a11.g1 MSMg01no130_a11.g1 CHROMAT_FILE:
MSMg01no130_a11.g1 PHD_FILE: MSMg01no130_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:38 2005
         (238 letters)



>mm_chr13_90275419_90276056
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatacagacacacagctctcctagcaaggtattactaggaactattctgcaccattaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caatacagacacacagctctcctagcaaggtattactaggaactattctgcaccattaac 379

                                                                       
Query: 61  attgtttgagaatagagccactggcatccaagcagatacagggcatgattttgctagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 attgtttgagaatagagccactggcatccaagcagatacagggcatgattttgctagtga 319

                                                                       
Query: 121 tggaagatttaaaattaatgtgtcatgagaagcagaacatgattaaaagtagttgcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tggaagatttaaaattaatgtgtcatgagaagcagaacatgattaaaagtagttgcttct 259

                                                                     
Query: 181 aggatggcttctgagtaagattcaattttacgtatatagattctagaattcaatctat 238
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 258 aggatggcttctgagtaagactcaattttacgtatatagattctagaattcaatctat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)