BAC Information

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BAC

Clone NameMSMg01-131C22
Chromosome13 (Build37)
Map Location 22,307,431 - 22,308,011
singlet/doubletsinglet
Overlap genenone
Upstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1
Downstream geneV1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131C22.T7 (MSMg01no131_c22.b1)MSMg01-131C22.TJ (MSMg01no131_c22.g1)
ACCAG338751AG338752
length713720
length of high quality
(start - end)
640 (74 - 713)570 (76 - 645)
definitionCHROMAT_FILE: MSMg01no131_c22.b1 PHD_FILE: MSMg01no131_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:19 2005CHROMAT_FILE: MSMg01no131_c22.g1 PHD_FILE: MSMg01no131_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCCTTGGTATTCCTGCCCAGAGCATTATTCACTGTGTTCAGATATT
TAGGATGATGTTGTGTTTTCCATGATGCTGTAGAGGAGCAGATGAAAGGC
AATAACTGACTTTTAGAGTCATGAAGCCATCTGGACACAAACCTAGGGAA
GAAACCAGGTTCACACATACCAAGTGTGCAATCACCAGGGTATAGACATT
TAAATAATCTTGTGAGCTTGACAGGAAGGAAAGCAAGGAACAGAGGCATT
CCAAGTACTCAGAACACACAAACCCATGGAGACACTGAAGCGATCCAGAT
TGCTCTTATTCTAGGAAAGTTGCCCAAAGCTTGCTAAAAATAGCCACGGT
ATGAGAATGGAGCTCCAAACATCATACTGCTGAGGTTTAAGTTCTGAAAT
CAGCTTAGATTGGTGTAGAACAAAGCAGCCTGCCTGACAAACAGGTTGGG
AAAGAAACAGGAGGAGAAGCAGGCTGTAAAGCAAGCTGACATAACCGCTG
CTCACAAGGCCTCACAGAGGCAAATGTCATCAGGACCTCTTAGATGGGAG
AGTCCCTGCTCACAACTGTATACTCCAACCTTCTCTGCTGCATACAGCCA
GAATGAGGACTCACAACTCATAAACTTACATACATGTTTACTCATCTCAT
GGCAATACCTAAC
NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCACTTTTCCTGCCTCAGGCTCTGG
GCTAGATCCAGCCTTTAGACCCCCCACTTCATCCTCAGCTATTCCGCACT
TCCCAGTGGTGCCTAGGTGTCCAAGAACTGGAGAACCAAATGGCCCCGAA
CCATCTACACCTGCCCCATACCTCAGAATGTGCTCCACCCCCTCACCCCC
TCTGGAGCAGTGTCCTGGAGTTTCCCTATGGCCCGATAGCCACCCAGTGA
CAGCGTGGGGTCAGCCTTGTTGACTTCCGGTGCCCTGCCTCCCCAAACAG
TTGAGCCCTGTGGTAGAGCAGATGAGGGACTGTGTAATCCTAGAACTGGT
GCCAACATGGTCTGTAACCTAGTTGGTCATTACTAAAATTTAGCCAAGAG
ACACTATTTGAGAAACCCACAACCAAGACTGTTGAATGAATTCCTTGGGA
GAATTTCAACTCTTGACCAGGAAGAAGACAAGGGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGGCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTC
AGTAACTGTTGAGATGTTTCCACTTCTCAGGTAGGAGCTGCAGCGAGCTG
AATGAGAACTTTGGTGAACAGCACATAGGGCACCTACCGGAGCCTCCCTG
GGGAGCCTGCAGCATAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_c22.g1 MSMg01no131_c22.g1 CHROMAT_FILE:
MSMg01no131_c22.g1 PHD_FILE: MSMg01no131_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:19 2005
         (570 letters)



>mm_chr13_22307201_22308175
          Length = 975

 Score =  400 bits (207), Expect = e-115
 Identities = 478/605 (79%), Gaps = 73/605 (12%)
 Strand = Plus / Plus

                                                                       
Query: 15  tcaggctctgggctagatccagcctttagaccccccacttcatcctcagctattccgcac 74
           ||||||| ||||||||||||||||| | || |||||||||||| ||||||| ||||||| 
Sbjct: 231 tcaggctttgggctagatccagcctgtgga-cccccacttcattctcagctcttccgcag 289

                                                                       
Query: 75  ttcccagtggtgcctaggtgtccaagaactggagaaccaaatggccccgaaccatctaca 134
           ||||||||||| | | |||||||||||||   ||||||| |||||||| ||||| || ||
Sbjct: 290 ttcccagtggtacatgggtgtccaagaacccaagaaccagatggccccaaaccagctcca 349

                                                                       
Query: 135 cctgccccatacctcagaatgtgc--tccaccccctcaccccctctggagcagtgtcctg 192
            ||| |||| |||||||| | |||  |||       ||   ||| |||||||||||||| 
Sbjct: 350 gctgtcccacacctcagactctgctttcc-------ca---cct-tggagcagtgtcctc 398

                                                                       
Query: 193 gagtttccctatggcccgatagccacccagtgacagcgtggggtcagcctt-gttgactt 251
            ||||||||||||||| || | ||||| ||||||      |||| || ||| || || ||
Sbjct: 399 aagtttccctatggcctgacacccacctagtgac------gggtaag-cttggtcgagtt 451

                                                                       
Query: 252 ccggtgccctgcctccccaaacagt---tgagccctgtggtagagcagatg-agggactg 307
           | |||  |||| |||||||   |||   |||| | ||||||||||| |||| | ||||||
Sbjct: 452 ctggtatcctgtctcccca---agtggctgagtcttgtggtagagcggatgca-ggactg 507

                                                                       
Query: 308 tgtaatcc-tagaactggtgccaacatggtctgtaacctagttggtcattactaaaattt 366
             ||| || || ||||||  |||||||  ||| |||||||||||| ||||| ||||||| 
Sbjct: 508 cataa-ccttacaactggcaccaacattttctttaacctagttggacattattaaaattc 566

                                                                       
Query: 367 agc-caagagacactatttgagaaacccacaaccaagactgttgaatg-a---attcctt 421
           |||  || |||||||| ||||||||||||||||||||||||||||||| |   |||||||
Sbjct: 567 agcaaaaaagacactacttgagaaacccacaaccaagactgttgaatgcatgcattcctt 626

                                                                       
Query: 422 gggagaatttcaactcttgaccaggaagaagacaagg----------------------- 458
           ||||||||||||||||||||||||| ||| |||||||                       
Sbjct: 627 gggagaatttcaactcttgaccagggagaggacaagggagagagagagagagagagagag 686

                                                                       
Query: 459 -------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtggcctcagctcccctgcca 505
                        |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 687 agagagagagagagtgtgtgtgtgtgtgtgtgtgtgtatgtggcctcagctcccctgcca 746

                                                                       
Query: 506 gatctgtttggtactccttcagtaactgttgagatgtttccacttctcaggtaggagctg 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gatctgtttggtactccttcagtaactgttgagatgtttccacttctcaggtaggagctg 806

                
Query: 566 cagcg 570
           |||||
Sbjct: 807 cagcg 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 975
Length adjustment: 10
Effective length of query: 560
Effective length of database: 965
Effective search space:   540400
Effective search space used:   540400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)