BAC Information

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BAC

Clone NameMSMg01-131G09
Chromosome13 (Build37)
Map Location 44,406,487 - 44,406,714
singlet/doubletsinglet
Overlap genenone
Upstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868
Downstream geneEG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131G09.T7 (MSMg01no131_g09.b1)MSMg01-131G09.TJ (MSMg01no131_g09.g1)
ACCAG338912AG338913
length711708
length of high quality
(start - end)
664 (48 - 711)230 (432 - 661)
definitionCHROMAT_FILE: MSMg01no131_g09.b1 PHD_FILE: MSMg01no131_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:36 2005CHROMAT_FILE: MSMg01no131_g09.g1 PHD_FILE: MSMg01no131_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATGGTTTCACAGCAAGCTCTGGAGGAAAAGCCAACCCCTGTAC
TCAGAGTGTCACTGATTTTATTTATAAATTGTTATGATTACCGTCCATTG
TGGTGACTCATGGCTGTAATCTTAATTCTTAGACTGAAGTGGAAAGACTG
TCATGAGTTCAAGGTCAGCCGAGGCTATACAGTTTAGACCACCTGACCTA
CATAGTAAGACCTTAACAAACAAACAAACAAACAAAATGAAACAAACAAA
CAAGCAAGCAAAAGCAAAATAAAAAACCCAAAGACCAGCAACAACAAAAA
ACCCTAATTCTAACAAAAACATCATGAAAATCGAGTAGCAGAACATCTAC
ACAACAGCAAAGTTACACACACACACAAACACAGAGAGAGAGAGAGATTT
CATATATATACATATTTATGATGAACTTTGATTTATCAATCAAGTATAAC
AAGAGTTACAATAACTAACAATGAAATAGAACCATTATGATAATGCACTG
CAATAAAATTTACTACAGTTTGTGGATTCTTTATTTCTGGAATTTTCCAC
TTAATATTTTAGGGCTGGAATTGAACATGGGCAACGGAAGCCCTGGAAAG
TAAAAGCAAAGGCAAGCGTGGAGTGCCGGGAGACAGAAGCTGGAGCTTCT
CTGCACAGTTC
CAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTCTTGGTTTTCACCATTACAGT
GATAACTTTACCATTGTTCTCACCTGTGATTTCTAAAATGGAAGGTTAGC
AGACACTGAATGGGAAAGTTCAGTTGTTTCCTTTTTTTAAAGCTTCTCTG
TCCAGCAGGGAAAACATGACTGCATTTATGGGTGTTTGACGTATCAAGGC
TACAGGGTAAGACAGACTGAATGAGCGGGTTCCTGTTGGCCTGCGTGTAG
CTGCTAAGTGAGCTACACAACTACAGCTTTCTTGTGAGGGAACTCACAGG
AAGTCTTGTTTTTTTCTCTCCCCACCCAACTCTATGAACTGCAAAACCAA
CGTCACTGAAGGTTTTGTCCGAACTAGACTGGAACACCATCACCTGACCT
TCCGTTAAAAAATACAAACAAACAAATAAAAGAAAACAACAACAACAACA
AACCCTGTCTGTGGATATGATGAGGGGTTGGCGAGGTGGTGGTGGCTTCT
CAGCAGTGTGGTGAACACTGATTGCCTGAGTCCCTCCAGGGGAAATGCAC
TGTGAGCCGGGCCATCAGGCATGCAAGCACACTCCTAATGCTTTGGAAGA
TGGACCTCAGTCATGGTCACAAGCTCTTTTCTTTCTCTTCTTCCAGCAAG
TGACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_g09.g1 MSMg01no131_g09.g1 CHROMAT_FILE:
MSMg01no131_g09.g1 PHD_FILE: MSMg01no131_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:36 2005
         (230 letters)



>mm_chr13_44406216_44406845
          Length = 630

 Score =  377 bits (195), Expect = e-109
 Identities = 221/231 (95%), Gaps = 4/231 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacaccatcacctga-ccttccgttaaaaaatacaaacaaacaaataaaagaaaacaac 59
           |||||||||||||||| |||||| |||||||||||||| |||||||||||||||   |||
Sbjct: 499 gaacaccatcacctgacccttcccttaaaaaatacaaagaaacaaataaaagaa---aac 443

                                                                       
Query: 60  aacaacaacaaaccctgtctgtggatatgatgaggggttggcgaggtggtggtggcttct 119
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 442 aacaacaacaaaccctgtctgtggatatgatgaggggttggagaggtagtggtggcttct 383

                                                                       
Query: 120 cagcagtgtggtgaacactgattgcctgagtccctccaggggaaatgcactgtgagccgg 179
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 382 cagtagtgtggtgaacactgattgcctgagtccctccaggggaaatgcactgtgagctgg 323

                                                              
Query: 180 gccatcaggcatgcaagcacactcctaatgctttggaagatggacctcagt 230
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gccatcaggcatgcaagcacactcctaatgctttggaagatggacctcagt 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)