BAC Information

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BAC

Clone NameMSMg01-132B19
Chromosome13 (Build37)
Map Location 29,931,761 - 29,932,097
singlet/doubletsinglet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132B19.T7 (MSMg01no132_b19.b1)MSMg01-132B19.TJ (MSMg01no132_b19.g1)
ACCAG339438AG339439
length712711
length of high quality
(start - end)
634 (68 - 701)337 (375 - 711)
definitionCHROMAT_FILE: MSMg01no132_b19.b1 PHD_FILE: MSMg01no132_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:32 2005CHROMAT_FILE: MSMg01no132_b19.g1 PHD_FILE: MSMg01no132_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCCGCGGAATCCA
CCTCAGCTGTCGNAGACAGGCCTGGCCTGCTCAGGTTCTGGGTTCAGTCC
CCCGATATTCAGATTTCGGGGCTAAGAAGCTTAAGGAGTTAAATCTTGCA
GATCACCACAGAAACTAAGGCATATTCAACCTTTTTCACAGCAGACTGAT
ATTTTTACTTTATGATCTTCAATACTGAGAGCACCAGTCACATTAATGTA
TAAGTAACCAGCAGAAAATGAATGGGGCTATTTCAGAAATGGTTGGAAAT
TCTGTCATGTTCTCAGGTTTTTAAAGAAATTGAAGTCAACTCAAGCCATA
GTTTTTTTGTTTTTTGAATTCTAAGTCTGCACTCCAGCAATACACTAATG
TGATTTTTCCTATGCTGAGGAACAATGGCAGGAAAATACTAAAAAGTCTT
TGTTTTCCATAATTAAGCCACAGTGTTTCTGTCAGCAGAAAGCTTTGTGT
GTATGGTGGAAACACAGTAGTTTGTGACCTACATAATCTCAGATCTGTGC
TGTTTCCTGGGGTGTGTTCATTGGTGTTTTTCTGGAGCGACAGCATGGGA
AATGCAAGCAGTGTCTTCTATGTTCAGAACCAAGGCTGTGGGGAAGGTGT
CTGATACAATATGGGTGAGTACTGGCAGATTCCATGAAATTCATCATTTC
AGTGTTTAATTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCCGAAATCACTTACTCCTTTAAAAATAGTGAAGATTCTGAGA
GAATCCCTGTCTTGAACAAAAAAAACAAAAAATGAAGATTCTAATCAATC
ACTCAAATTCTGGAGACCAAACCAGATTTTCCAACTAATCCTTCAAGAAA
GCCAACATTCTCCTCAATCATTCAAGATTATTTAAACATAAGGAGAATAC
TGCTTGAAGTACAAAGGACACAGGAAAGGCCCACACTCCTTGGTTTGTAC
AGATGACACAGTATAGGACAAATCAGGGCTGCTTAGCATTCTGTCCAAAA
TGAGTTTGGTTACTTCCTACCAACCCAAATATGGGGAAATTTCTCAGCCA
ACTAGACAAATAAATCAAATATATATATTTGATTTGATATATATATTAAT
TATTTCTGTGCTGCCTGAAAAACAAACATGTATATAAAGAAGAAACAGAA
ACTAACAGAGAAATCACGAAAGTAGCTCTGTGAGGAGTGTCAACCTAGCA
CTCCAGAATCCCTAAGTTCAAATCCAAGCATAGCCTAAGTTTGTAATCTC
AGCCACTTCAAAGAGGCCACAAATCATTGTGTATCCCACTTTATACCTCG
GCAACAAAGTCTTAAACACCCTTCTAAATATAGTTATAGTTCAATAAGGT
ACTACAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_b19.g1 MSMg01no132_b19.g1 CHROMAT_FILE:
MSMg01no132_b19.g1 PHD_FILE: MSMg01no132_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:32 2005
         (337 letters)



>mm_chr13_29931561_29932297
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaatatggggaaatttctcagccaactagacaaataaatcaaatatatatatttgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaatatggggaaatttctcagccaactagacaaataaatcaaatatatatatttgatt 260

                                                                       
Query: 61  tgatatatatattaattatttctgtgctgcctgaaaaacaaacatgtatataaagaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatatatattaattatttctgtgctgcctgaaaaacaaacatgtatataaagaagaa 320

                                                                       
Query: 121 acagaaactaacagagaaatcacgaaagtagctctgtgaggagtgtcaacctagcactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaaactaacagagaaatcacgaaagtagctctgtgaggagtgtcaacctagcactcc 380

                                                                       
Query: 181 agaatccctaagttcaaatccaagcatagcctaagtttgtaatctcagccacttcaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaatccctaagttcaaatccaagcatagcctaagtttgtaatctcagccacttcaaaga 440

                                                                       
Query: 241 ggccacaaatcattgtgtatcccactttatacctcggcaacaaagtcttaaacacccttc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcaacaaatcattgtgtatcccactttatacctcggcaacaaagtcttaaacacccttc 500

                                                
Query: 301 taaatatagttatagttcaataaggtactacaaaata 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaatatagttatagttcaataaggtactacaaaata 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)