BAC Information

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BAC

Clone NameMSMg01-132G23
Chromosome13 (Build37)
Map Location 108,957,247 - 109,105,937
singlet/doubletdoublet
Overlap geneErcc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524
Upstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l
Downstream geneDepdc1b, Pde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132G23.T7 (MSMg01no132_g23.b1)MSMg01-132G23.TJ (MSMg01no132_g23.g1)
ACCAG339680AG339681
length720718
length of high quality
(start - end)		672 (49 - 720)536 (74 - 609)
definitionCHROMAT_FILE: MSMg01no132_g23.b1 PHD_FILE: MSMg01no132_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:57 2005CHROMAT_FILE: MSMg01no132_g23.g1 PHD_FILE: MSMg01no132_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,105,513 - 109,105,937)(108,957,247 - 108,957,813)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCGTCTTCTCTTCCCCGAACACCTACACATCTCCTGCCCGTGGGAAT
TGCTGGTCCAACTTGCAACTGTTGAAAGAGACAAATGACTTCACTTTATA
CTATATGCCTTTAGCTCGGTGACAATGAATCTATGTCTGGACTCCTCCGT
GAAGACTGCTGAACAACTCCACCTTGATCGTAGAAGGTGATAGGCAATAG
ACATATTAGACAGTGATTAATTCAATAGCTAGTGATTAATTCAGACCCTC
AAAACTGGTGAAAGTCCTGAGAATAAATAGGGCTGAGCATGGGACACTGG
TATGAACACCCGTAAGATGCTGTCTTCCGAACATAATATGGCTGACCTGG
CTGTTCATTCATGAATTCACAGCAAGACCTACACACGATGGAGCCTGTCA
ATCAATATTCTAGCATACCAGGGCAGGAAGGGCGTATGAGCCAGTAGTGA
GGAGATTATTGGAAATGAATGGCTGCTGAGAGATGCCATCTATTTTCTTC
CAGTAAAGAGCCTAACACCCATGCTCATGTTTGAAACCCTAATTAAACTC
AGTGAGTCACTGTCTTAATCAGGGTTTCTATTCCTGCACAAACATCATGA
CCAAGAAGCAAGTTGGGGAGGAAAAGGTTTATTCAGCTTACACTTCCATA
CTGCTGTTCATCACCAAGGA

NCAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGGACAGCCAGGGCTACATAGAGAAA
TCCTGTCTTACGGGGGGCGGGGGGGGGGAAGGGATACATACACACACACA
CACACACACACACACACACGCACGCATATATTTTGCTTAACCTAAAAATA
CACCTATCTGTCCTGACTTCTCTGGCTCTTTGGTAGTTTCTTTTTTCCTA
AGAGTCGTTTGAAGCTCTTTTGCCAGCTGTGTGTGTCTGATCTGTTCTTA
CAGTAACTTTGCCTTGGCCAGTGCTCTCTCAGGAGAAGCTCGCAGAGCTG
TGCGTTCCAGAGCACTGCAAAGGACCCTAGGTTCTGATTTATAATTGTGT
GTTTACACACTATTCATTTCACAAACACAGCTTTGAAAATCTCTCTTGAG
ACTGGCTTATTTTGTCTTAGAGGTAATTTTACTGGTTCCATCATTCTTAG
CATGCTTCTGTGGTAATTAAATATTTTAAAAGCATGTTTAAAGCTGTAAA
AGCTACCGTGTAAACCAGCATAGCAGCTTCCCGCACTGTGAAAGCTCGCT
GGCTGGGAGAGCGCTTGCAGGTCAGTTCCAGCTTCATCTCTCCATGTTGT
GACCAAGATGCACTGTGTCCTGCAGTAATGCCTTACCATCTGATTAATGG
TGGGCAACCAAGATTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_g23.b1 MSMg01no132_g23.b1 CHROMAT_FILE:
MSMg01no132_g23.b1 PHD_FILE: MSMg01no132_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:57 2005
         (672 letters)



>mm_chr13_109105513_109106585
          Length = 1073

 Score =  775 bits (401), Expect = 0.0
 Identities = 419/425 (98%), Gaps = 1/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcgtcttctcttccccgaa-cacctacacatctcctgcccgtgggaattgctggtc 60
           ||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaattcgtcttctctgcactgaatcacctacacatctcctgcccgtgggaattgctggtc 366

                                                                       
Query: 61  caacttgcaactgttgaaagagacaaatgacttcactttatactatatgcctttagctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caacttgcaactgttgaaagagacaaatgacttcactttatactatatgcctttagctcg 306

                                                                       
Query: 121 gtgacaatgaatctatgtctggactcctccgtgaagactgctgaacaactccaccttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtgacaatgaatctatgtctggactcctccgtgaagactgctgaacaactccaccttgat 246

                                                                       
Query: 181 cgtagaaggtgataggcaatagacatattagacagtgattaattcaatagctagtgatta 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 catagaaggtgataggcaatagacatattagacagtgattaattcaatagctagtgatta 186

                                                                       
Query: 241 attcagaccctcaaaactggtgaaagtcctgagaataaatagggctgagcatgggacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 attcagaccctcaaaactggtgaaagtcctgagaataaatagggctgagcatgggacact 126

                                                                       
Query: 301 ggtatgaacacccgtaagatgctgtcttccgaacataatatggctgacctggctgttcat 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 125 ggtatgaacacccgtaagatgctgtcttccgaacataatatggttgacctggctgttcat 66

                                                                       
Query: 361 tcatgaattcacagcaagacctacacacgatggagcctgtcaatcaatattctagcatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tcatgaattcacagcaagacctacacacgatggagcctgtcaatcaatattctagcatac 6

                
Query: 421 caggg 425
           |||||
Sbjct: 5   caggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_g23.g1 MSMg01no132_g23.g1 CHROMAT_FILE:
MSMg01no132_g23.g1 PHD_FILE: MSMg01no132_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:57 2005
         (536 letters)



>mm_chr13_108957079_108958013
          Length = 935

 Score =  882 bits (456), Expect = 0.0
 Identities = 525/570 (92%), Gaps = 37/570 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggacagccagggctacatagagaaatcctgtcttacggggggcggggggggggaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 169 taggacagccagggctacatagagaaatcctgtcttacggggggcggggggggg--aggg 226

                                                                       
Query: 61  ------atacatacacacacacacacacacacacacacacacgcac-------------- 100
                 ||||| |||||||||||||||||||||||||||||| |||              
Sbjct: 227 ggagaaatacacacacacacacacacacacacacacacacacacacacacgcgcgcgcgc 286

                                                                       
Query: 101 --------------gcatatattttgcttaacctaaaaatacacctatctgtcctgactt 146
                         |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 287 gcgcgcgcgcgcgcgcatatattttgcttaacctaaaaatacacctgtctgtcctgactt 346

                                                                       
Query: 147 ctctggctctttggtagtttcttttttcctaagagtcgtttgaagctcttttgccagctg 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 347 ctctggctctttggtagtttcttttttcctaagagtcgtttgaagctcttt-gccagctg 405

                                                                       
Query: 207 tgtgtgtctgatctgttcttacagtaactttgccttggccagtgctctctcaggagaagc 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgtgtgtctgatctgttcttacagtaactttgccttggccagtgctctctcaggagaagc 465

                                                                       
Query: 267 tcgcagagctgtgcgttccagagcactgcaaaggaccctaggttctgatttataattgtg 326
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcgcagagctgtgcgttccagaacactgcaaaggaccctaggttctgatttataattgtg 525

                                                                       
Query: 327 tgtttacacactattcatttcacaaacacagctttgaaaatctctcttgagactggctta 386
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgtttacacactattcattttagaaacacagctttgaaaatctctcttgagactggctta 585

                                                                       
Query: 387 ttttgtcttagaggtaattttactggttccatcattcttagcatgcttctgtggtaatta 446
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 586 ttttgtcttagaggtaattttactggttccatcattcttagtatgcttctgtggtaatta 645

                                                                       
Query: 447 aatattttaaaagcatgtttaaagctgtaaaagctaccgtgtaaaccagcatagcagctt 506
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 646 aatattttaaaagcatgtttaaagctgtaaaagctactgtgtaaaccagcatagcagctt 705

                                         
Query: 507 cccgcactgtgaaagctcgctggctgggag 536
           ||||||||||||||||||||||||||||||
Sbjct: 706 cccgcactgtgaaagctcgctggctgggag 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space:   486550
Effective search space used:   486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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