BAC Information

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BAC

Clone NameMSMg01-132H22
Chromosome13 (Build37)
Map Location 97,837,028 - 97,837,262
singlet/doubletsinglet
Overlap genenone
Upstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik
Downstream geneEG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132H22.T7 (MSMg01no132_h22.b1)MSMg01-132H22.TJ (MSMg01no132_h22.g1)
ACCAG339724AG339725
length707694
length of high quality
(start - end)
235 (122 - 356)249 (72 - 320)
definitionCHROMAT_FILE: MSMg01no132_h22.b1 PHD_FILE: MSMg01no132_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:01 2005CHROMAT_FILE: MSMg01no132_h22.g1 PHD_FILE: MSMg01no132_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CTGACATTTCTTTGATTGTTTGTTTGTTTGTTTATTTTGCCTTTTGTATT
ACTTACTTTTGCCTGTTCAGGAGGAACGCCACGGTCAGGAAGCTTGTTTT
CAGGTTTAAAAAAAAGAAACCTCCGGACTAAAGGCTAAGTGAGATGCCTA
TTAGCATAACAAAGTGCGAGCTGCCCTCCAGACTTGCAAAGCTACAAACA
CAGTGTGGGCTTCCTGACTCCTCAGCTCTTCCCACCCTGCCTCCTACCCT
AAACTTCTCCAGTTCACATATTCACCCACCCCCACCTCCACTGCCACCCC
CGCCATTTNCTCACTCTNAAGCANATCGTCCCACCTCCCACCTCCTTCTC
TCTCCCTCTCCTTTGCCCAAACTATCAAACACTCGCTCGCGGCCTTTCTT
CTCTCATGGATGGCCATGTTCAACCTACTACTTTGTCTCCTTGAGGCTTA
CAGATGCCTCTGGCTGTACCCTCCCTCTTATCTTCCCTTTGCACATAGCA
GCCATTATCTGCGTAGTATTCTGGAGGTCAGAGATGAAATCTGGGACCAA
GACCTACCACGTTTAGGAACTGCAGTGTCAGTTACAGGCACCAACTTCCA
CTTTTCTCTGTTGCTTGTCAACAGGTGCCAACAGAGCTAATACTTAAAAG
TCAAAAC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGATGGCCTAGAACTCTTTATGTAGCCAA
CGCTAACTTGTAGTGATCCTCCTGCCTCAGCCCTCCAAGTTCTGGGATTA
CATATGTAAGCCACTCAGGACCATTCACATGTCCTTTTTTTGGGGGGGGG
TTGTTTGTTTGTTTGTTTGTTTTGAGACAGGGTTTCTCTGTACAGCTCTG
GCTGTCCTAGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAAT
CTACCTGCCTCTGCCTCCCGTATTGTTGGGATTAAAGGCGTGCGCTACCA
CTGCCCAGCCCATTCACATTTTCTAATTTGAATAACCAGATGGTCTGACT
GCATATGTTGAAAGAGGCATCCTCAGTCCAATAAATTGCCTATGTGTCTC
TGTTTAAAACAACAAAACCAAAACAGCTATTCATATTATGTCTATTTCTG
GATTCCCTATTGCTTCATGATTTATTTGTTTACCTTTCTGTTAGCATTAA
ACTACCTTGATTGTCGTTGCTATAGAACACATCTTGCAAATTAGTTAGTG
CTAATCTTCTGACTCTTCTTTAATACTTTCTGTCCAGNACGTTGACTATC
GGTAGCCCCATATTGAATTTTAGGACGAGCTTTGCAGGTTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_h22.b1 MSMg01no132_h22.b1 CHROMAT_FILE:
MSMg01no132_h22.b1 PHD_FILE: MSMg01no132_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:01 2005
         (235 letters)



>mm_chr13_97836866_97837500
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaacgccacggtcaggaagcttgttttcaggtttaaaaaaaagaaacctccggactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aggaacgccacggtcaggaagcttgttttcaggtttaaaaaaaagaaacctccggactaa 338

                                                                       
Query: 61  aggctaagtgagatgcctattagcataacaaagtgcgagctgccctccagacttgcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aggctaagtgagatgcctattagcataacaaagtgcgagctgccctccagacttgcaaag 278

                                                                       
Query: 121 ctacaaacacagtgtgggcttcctgactcctcagctcttcccaccctgcctcctacccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctacaaacacagtgtgggcttcctgactcctcagctcttcccaccctgcctcctacccta 218

                                                                  
Query: 181 aacttctccagttcacatattcacccacccccacctccactgccacccccgccat 235
           ||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 217 aacttctccagttcacagactcacccacccccacctccactgccacccccgccat 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)