Query= MSMg01no132_j11.b1 MSMg01no132_j11.b1 CHROMAT_FILE:
MSMg01no132_j11.b1 PHD_FILE: MSMg01no132_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:09 2005
(631 letters)
>mm_chr13_38700874_38701904
Length = 1031
Score = 1112 bits (575), Expect = 0.0
Identities = 617/631 (97%)
Strand = Plus / Minus
Query: 1 attgataagcatcatttgtccaaatcacatttcccacaattgatatctaaaagaacattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 attgataagcatcatttgtccaaatcacatttcccacaattgatatctaaaagaacattc 772
Query: 61 aaaggaacaatatatgcccattctgctgtgattccgcatgtcttaagacctgccctaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aaaggaacaatatatgcccattctgctgtgattccgcatgtcttaagacctgccctaata 712
Query: 121 cagagtgtgttcttggtgctgagagaatagtgaactgaaaatacagttagcttgtgacgt 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 711 cagagtgtgttcttggtgctgagagaatagtgaactgaaaatacagttaacttgtgacgt 652
Query: 181 ccactcactccaaaacagtcatggaaagatgaggtggccggggacagtggtcagaatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ccactcactccaaaacagtcatggaaagatgaggtggccggggacagtggtcagaatata 592
Query: 241 aacgtggctccatgggcatgcatctactttggcaaccggttccagccggcccagtgacaa 300
||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 591 aacgtggctccgtgggcatgcatctactttggcaacccgttccagccggcccaatgacaa 532
Query: 301 ggacttgactgtgcaggcttctgtttcatcttgaccacagacacttactgactgtagcta 360
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 531 ggacttgactgtgcaggcttctgtttcatctcgaccgcagacacttactgactgtagcta 472
Query: 361 gcttccttatgatgttatcatgcgagcagtgacatcacatggagccttgttgatagagtt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 471 gcttccttatgatgttatcatgcgagcagtgacatcacacggagccttgttgatagagtt 412
Query: 421 tgaatataaccattgtttcttgatagaactagaaagtgcagaggagagaagtataaattg 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 411 tgaatatagccattgtttcttgatagaactagaaagtgcagaggagagaagtatagattg 352
Query: 481 ctctgtgtaaaataatttaatacgttttatactgatactttttcctaaagtcgtcttcct 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct: 351 ctctgtgtaaaataatttaataggttttatactgatactttttcctaaagtcttcttctt 292
Query: 541 tatgcccgtgtaaagctcagataaagctaacatcatgcgtgttactaacaggcgttctga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatgcccgtgtaaagctcagataaagctaacatcatgcgtgttactaacaggcgttctga 232
Query: 601 atcttcctgatgcacgatctccccagtaccc 631
|||||||||||||| |||||| |||||||||
Sbjct: 231 atcttcctgatgcaggatctcaccagtaccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_j11.g1 MSMg01no132_j11.g1 CHROMAT_FILE:
MSMg01no132_j11.g1 PHD_FILE: MSMg01no132_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:09 2005
(571 letters)
>mm_chr13_38602423_38603393
Length = 971
Score = 922 bits (477), Expect = 0.0
Identities = 547/577 (94%), Gaps = 14/577 (2%)
Strand = Plus / Plus
Query: 1 tgcaggtccacaaaccatatgtgctcagcaaagaatgcagaaagaaatgctggggaacat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcaggtccacaagccatatgtgctcagcaaagaatgcagaaagaaatgctggggaacat 260
Query: 61 gtagatcaacagaaccttgacacagacaccctcagccttcagtgagtgtacaactgcatt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 261 gtagatcaacagaaccttgacacagacaccctcagccttcaatgagtgtacaaatgcatt 320
Query: 121 taagattcataaaatccacagagacaaagtttggagctgagacgaaaggacggaccatct 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 taagattcataaaatccacagagacaaagtttggagctgagacgaaaggatggaccatct 380
Query: 181 agagactgccatacccggggatccatcccataatcagcttccaaacgctgacaccattgc 240
|| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct: 381 ag----tgccatacccggggatccatcccataatcagcctccaaacgcagacactattgc 436
Query: 241 atacactagcaagattttgctgaaaggaccctgatacagctgtctcttgtgagactatgc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 atacactagcaagattttgctgaaaggaccccgatacagctgtctcttgtgagactatgc 496
Query: 301 cagggcctagcaaacacagaagtggaggctcacagtcagctattggatggatcacagggc 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tggggcctaacaaacacagaagtggaggctcacagtcagctattggatggatcacagggc 556
Query: 361 ccccaatggaggagctagagaaagtacccaaggagctaaa----gtgatctgcaacccta 416
||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 557 ccccaatggaggagctagagaaagtacccaaggag----atggggggatctgcaacccta 612
Query: 417 taggtggaacaacaatatgaactaaccagtacccccccg--gaactcgtgtctctagctg 474
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 613 taggtggaacaacaatatgaactaaccagtaccccccccccgaactcgtgtctctagctg 672
Query: 475 catatgtatcagaagatggcctagtcggccatcagtggaaagagaggcccattggtcgtg 534
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 673 catatgtatcagaagatggcctagtcagccatcagtggaaagagaggcccactggtcgtg 732
Query: 535 caaactttatatgcctcaatacaggggaacgccaggg 571
||||||||||||||||||||||||| |||||||||||
Sbjct: 733 caaactttatatgcctcaatacaggagaacgccaggg 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
