Query= MSMg01no132_k17.b1 MSMg01no132_k17.b1 CHROMAT_FILE:
MSMg01no132_k17.b1 PHD_FILE: MSMg01no132_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:15 2005
(668 letters)
>mm_chr13_48090241_48091308
Length = 1068
Score = 659 bits (341), Expect = 0.0
Identities = 347/349 (99%)
Strand = Plus / Minus
Query: 320 taacaaacctcttggctggagaagaaccttagaccaaatgtttcactgtgaaattctacc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 taacaaacctcttggctggagaagaaccttagaccaaatgtttcactgtgaaattctacc 1009
Query: 380 agctgtttaaaggaagattaacacaatcctcttaggattcttctaaaaaagaaaaatcaa 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 agctgtttaaaggaagattaacacaatcctcttaggattcttctaaaaaagaaaaatcaa 949
Query: 440 gaaggtaaaacttcaaaattcaacataaaaggaagcagttaccctagtgctacggtctaa 499
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 948 gaaggtaaaacttcaaaattcaacataaaaggaagcagttactctggtgctacggtctaa 889
Query: 500 ggcaccacaagaggaagaaataatgtcaaagtgtcccgtgaaaagcaatgcaagcatgac 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ggcaccacaagaggaagaaataatgtcaaagtgtcccgtgaaaagcaatgcaagcatgac 829
Query: 560 tataaacaagaagcaggtgggtcactcgtggaatgaaaggatggcttggcatctatatct 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tataaacaagaagcaggtgggtcactcgtggaatgaaaggatggcttggcatctatatct 769
Query: 620 acatcactgggacacccgtgttaacaacaaaataaaggacagaacctca 668
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 acatcactgggacacccgtgttaacaacaaaataaaggacagaacctca 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_k17.g1 MSMg01no132_k17.g1 CHROMAT_FILE:
MSMg01no132_k17.g1 PHD_FILE: MSMg01no132_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:15 2005
(665 letters)
>mm_chr13_47940437_47941501
Length = 1065
Score = 1133 bits (586), Expect = 0.0
Identities = 633/666 (95%), Gaps = 30/666 (4%)
Strand = Plus / Plus
Query: 1 ggttctcctgcttatgcagaagtacttttattccctgagccatctacccaggcctcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttctcctgcttatgcagaagtacttttattccctgagccatctacccaggcctcctcc 260
Query: 61 aggtactgtttaaccaagctctccaatgcatccagttatgactagctctccacaagctcc 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aggtactgtttaaccaagctctccaatgcatccagttatgacttgctctccacaagctcc 320
Query: 121 ccatgggcttgatttacctttggttaagaagtaaaagcagggactagagaaatggtccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgggcttgatttacctttggttaagaagtaaaagcagggactagagaaatggtccag 380
Query: 181 agagttaagatcatcactgctcttcttctgatgccagtggttcagttcccacaacccaca 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 agagttaagatcatcactgctcttcttatgatgccagtggttcagttcccacaacccaca 440
Query: 241 tggtggctcacaactgcctaactccagttccacaggagatggcaccctcttctagcctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtggctcacaactgcctaactccagttccacaggagatggcaccctcttctagcctct 500
Query: 301 gcagcactagatatgcacatgttttttaccctgagctacatcaacttaaatt-aaaaaaa 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gcagcactagatatgcacatgttttttaccctgagctacatcaacttaaatttaaaaaaa 560
Query: 360 aaaaaagagtacttttggctcatggtttcaggggcttcagtcatgattggctggtttcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaagagtacttttggctcatggtttcaggggcttcagtcatgattggctggtttcat 620
Query: 420 ttatatatatatattatatatatattatataataatgtatattatataatatacattata 479
||||||||| ||||||||||||||||||||||||
Sbjct: 621 --atatatata-------------------------gtatattatataatatacattata 653
Query: 480 tataaaatataatatataataatgtatattatatatcatatgatatataagcctggtgag 539
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tataa--tataatatataataatgtatattatatatcatatgatatataagcctggtgag 711
Query: 540 gactgactcagcactcgaagcagggctagttcataaagacacagaagcactttggagaga 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gattgactcagcactcgaagcagggctagttcataaagacacagaagcactttggagaga 771
Query: 600 aaagggttaagtgtatatatgctgttgcctgatttggttgtctgtcagaatgcatgctct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aaagggttaagtgtatatatgctgttgcctgatttggttgtctgtcagaatgcatgctct 831
Query: 660 agggca 665
||||||
Sbjct: 832 agggca 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
