BAC Information

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BAC

Clone NameMSMg01-133B02
Chromosome13 (Build37)
Map Location 85,777,554 - 85,778,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133B02.T7 (MSMg01no133_b02.b1)MSMg01-133B02.TJ (MSMg01no133_b02.g1)
ACCAG340143AG340144
length703712
length of high quality
(start - end)
234 (130 - 363)489 (76 - 564)
definitionCHROMAT_FILE: MSMg01no133_b02.b1 PHD_FILE: MSMg01no133_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:46 2005CHROMAT_FILE: MSMg01no133_b02.g1 PHD_FILE: MSMg01no133_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTACATGATCACCACCAGTTGTGCCAGCACCATTTGTTGAAAAT
CAGTGCAGCTTAATTTATTAATCATTTAATTATGCTTATTTTTGATTATT
TCCTTTATTTTTGAGATAACATAATTATATTATGTCTCCCTTCATTCTCT
CTGCAAACTTTCCTTTATATCCCTCTTTCTGAATCCCTTCAAATTCATGG
TCTCTTTTTTCATTAATTGTTGTTATATGCATATATGTATATTTATATTC
TTACATATAACCTGCTCATTCTGTATAATGTTACTTGTATGCATACTTTC
AAGACTTTGTATTATATAACTGCCTCATCTGTCCTTCCTTGGGGGAAACT
ACTCCCACTCTTACCATTCCCTAAATGCCTGTAGTTCATAGAATAATCTT
GAGGCCTTGTGGTCTTTCCTTAGTCCACTTTGTTATGTCTATTGTTATCC
TGTTCAGTTTGTGGTTAGGCAGTCATATTGATGACTCTTTATGGATAGAG
TTTCTGCCATTAGTAGCAGATGATTTCAAAACAAATTTTCTCGTTTCTAT
GGNCTTTACAATCATTCTGCCCACACTTTTTTAATGTTTCCTGAGCATTA
GTTGGGGAAGTTGTTTTGCAGATGTATCCATTGGAACTGCGGCTCTTTAA
CTC
GATGATAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGGCAGGGAGTGGGGAGTGAGTGGGT
GACTGGGGAGCACCCTCATAGAAGCATGGGAAGGGGAATGGGATAAGGGA
TTTCTTGAGGGAACATTTGAAATGTAAATAAATAAAATATCCAATAAAAA
AGGAAAGAAAATCTAAAAAAAAAAAATCTAAATAAATAAATAGTAACATA
AACCCCAAGTAGGACATCACCTGCAGCCCCAAACACTCCTTAGATTCTGC
CCATCAGCCCTCCAAAGCACCTCATGCCTTTGGCTCCATAAACCAGCCCA
CAACTCTAGCAGAGGATGTCTGCTCTAATAGAGTCCATGAGAGTACTTGG
AAGCCCAGAGGCCAAGATCACCAGTGTCCATACAAGTAACTGAAATCACA
TAGGCCACACCAGACCCAGATCCAGAAACCATGCTAATTCCTAGGACCCC
ACGATCCCAGAGGCAATGCAGATACCTAAAACCCCAGAGGTCACAGAAGT
CAGCGAAACCCCAGTGGAGACACTGTACCCAGTCTGAAGACTTGTTGCTC
ACCAGACTCACAGGCCACTCAGAACAGAACACCAAAGATAAGTTAGAGAC
CAAGAAACCATTCTGAAAGCACATATACTACCAAATTAACTCGGTAATCA
GCACTTAACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_b02.g1 MSMg01no133_b02.g1 CHROMAT_FILE:
MSMg01no133_b02.g1 PHD_FILE: MSMg01no133_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:47 2005
         (489 letters)



>mm_chr13_85777206_85778094
          Length = 889

 Score =  934 bits (483), Expect = 0.0
 Identities = 487/489 (99%), Gaps = 2/489 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcagggagtggggagtgagtgggtgactggggagcaccctcatagaagcatgggaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ggcagggagtggggagtgagtgggtgactggggagcaccctcatagaagcatgggaaggg 776

                                                                       
Query: 61  gaatgggataagggatttcttgagggaacatttgaaatgtaaataaataaaatatccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaatgggataagggatttcttgagggaacatttgaaatgtaaataaataaaatatccaat 716

                                                                       
Query: 121 aaaaaaggaaagaaaatctaaaaaaaaaaaatctaaataaataaatagtaacataaaccc 180
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aaaaaaggaaagaaaatct--aaaaaaaaaatctaaataaataaatagtaacataaaccc 658

                                                                       
Query: 181 caagtaggacatcacctgcagccccaaacactccttagattctgcccatcagccctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 caagtaggacatcacctgcagccccaaacactccttagattctgcccatcagccctccaa 598

                                                                       
Query: 241 agcacctcatgcctttggctccataaaccagcccacaactctagcagaggatgtctgctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agcacctcatgcctttggctccataaaccagcccacaactctagcagaggatgtctgctc 538

                                                                       
Query: 301 taatagagtccatgagagtacttggaagcccagaggccaagatcaccagtgtccatacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 taatagagtccatgagagtacttggaagcccagaggccaagatcaccagtgtccatacaa 478

                                                                       
Query: 361 gtaactgaaatcacataggccacaccagacccagatccagaaaccatgctaattcctagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtaactgaaatcacataggccacaccagacccagatccagaaaccatgctaattcctagg 418

                                                                       
Query: 421 accccacgatcccagaggcaatgcagatacctaaaaccccagaggtcacagaagtcagcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 accccacgatcccagaggcaatgcagatacctaaaaccccagaggtcacagaagtcagcg 358

                    
Query: 481 aaaccccag 489
           |||||||||
Sbjct: 357 aaaccccag 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)