BAC Information

Click to search

BAC

Clone NameMSMg01-133K04
Chromosome13 (Build37)
Map Location 30,434,974 - 30,435,282
singlet/doubletsinglet
Overlap geneAgtr1a
Upstream geneCdkal1, E2f3, Mboat1
Downstream geneUqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133K04.T7 (MSMg01no133_k04.b1)MSMg01-133K04.TJ (MSMg01no133_k04.g1)
ACCAG340559AG340560
length694709
length of high quality
(start - end)
316 (38 - 353)636 (74 - 709)
definitionCHROMAT_FILE: MSMg01no133_k04.b1 PHD_FILE: MSMg01no133_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:29 2005CHROMAT_FILE: MSMg01no133_k04.g1 PHD_FILE: MSMg01no133_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGATTCAGG
AAACCATCAGAGTCACAGTACCCTTCTTCGTTGCGCTAACAGTCTCGGGC
TAAGGAGAGAAAGGCCCAGTGAACTATGAGGTCATTGGCTGACAGTCCAT
AGCAAACCCAAGGTGGGAACCGAGAGTCAGTAAAGAAAACTGGGAGTGCA
TACACAGACTCTTGAATGAGTTCAGGCTATCCAGCCTGAAGCCTTTTAGG
CCCGTTGCACTTTCTTTCTTCAGCTTTTTGTTGTTGCTGTTACTCTTCTG
CTTTACAAATTTTCAGGCATCAGTAAAAACAAAAGAAATTATTTCCCTTA
CAAGTTTTTGATAACAACCCCCCCCTTCCTTTCTTTGGAATAGCAAGAAC
CTAGGTCTGACTTTAACAGTATTTTGACAAGAATTGTGGATTCTACAAAG
CCGGTGTAGACAGAGTGGTACTTGTGATTGCACTTGTCATTAAATGTTAC
TAAAAATATAAGACACATATACTACGACTTTATACTTCTTTATCATGTTG
CTTAAAATTGTGGCCGCTTGGTCCTGTTAGCGAAACTCCTCTCGCAGCAA
GTCAAGTGTTCGAAAGTATTTAAGAAGCCATTGTGTGCGGAAACCCTGCC
AATCCCTTTGCCTTGCCGAGAAAGAAGCAGCATCTAGCTGTGTG
GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAGATCTGTGTCTCCTGTTCCTTCA
GTTTAGGATTTAAGAAGAAGAAACCAGAGGCTGTGGAGATGGCTCAGGCT
ATAAAGTGCTAGCTGTTCAAGTTGAAGACCTGGGTTGACATCCTGCCTTA
GGGTTTCTAGTGCTGTGAAGAGACACCATGGCAACTCTTGAAAAGGAAAA
TGTTCAATTGAGCTGGCTTACAGTTTCAGAAGATCAGTCCATTATCATCA
TGGCGGGAAACGTAGTATGCAGGCAGACATGGTGCTGGAGAAGGAGCTGA
GAGTTCTTCATCTGCAGGCAGCAGCAGAAGACTGAGTGCCACACTGGCCA
TAGCTTGAGCATAAAGACACCTCAAAACATGCTCCATAGTGACACACTTC
CTCTAACAAGGTCACATCTACCCCAACAAAGCGATACCTCCTAATAGTGC
CAATGTCTGTGGGCCAAGCATTTAAACACTTGAGCAGGGCAGAGACAGGC
TGATCCCCGGAGTTTGCTGGCCCCCCACCCTAACTGAGTTGATGAACCCC
AGGTTCAGTGAGAGTATTTCTAGTCAATGGCATGTCTACTTTAACTATAT
GTCTCATTAAAGTCAGTTTGGGTTACATCCAACCTCTGTCTGGTTAGTTC
ATTTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_k04.b1 MSMg01no133_k04.b1 CHROMAT_FILE:
MSMg01no133_k04.b1 PHD_FILE: MSMg01no133_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:29 2005
         (316 letters)



>mm_chr13_30434768_30435482
          Length = 715

 Score =  516 bits (267), Expect = e-151
 Identities = 300/311 (96%), Gaps = 3/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcaggaaaccatcagagtcacagtacccttcttcgttgcgctaacagtctcgggctaa 66
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 attcagg-aaccatcagagtcacagtacccttcttcgttgcgctaacagtctcgggctaa 457

                                                                       
Query: 67  ggagagaaaggcccagtgaactatgaggtcattggctgacagtccatagcaaacccaagg 126
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggagagaaaggcagagtgaactatgaggtcattggctgacagtccatagcaaacccaagg 397

                                                                       
Query: 127 tgggaaccgagagtcagtaaagaaaactgggagtgcatacacagactcttgaatgagttc 186
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 396 tgggaaccgagagtcagtaaagaaaactgggaatgcatacacagactcttgaatgagttc 337

                                                                       
Query: 187 aggctatccagcctgaagccttttaggcccgttgca-ctttctttcttcagctttttgtt 245
           ||||||||| ||||||||| |||||| || |||| | |||||||||||||||||||||||
Sbjct: 336 aggctatccggcctgaagctttttagacctgttg-agctttctttcttcagctttttgtt 278

                                                                       
Query: 246 gttgctgttactcttctgctttacaaattttcaggcatcagtaaaaacaaaagaaattat 305
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gttgctgttagtcttctgctttacaaattttcaggcatcagtaaaaacaaaagaaattat 218

                      
Query: 306 ttcccttacaa 316
           |||||||||||
Sbjct: 217 ttcccttacaa 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space:   216742
Effective search space used:   216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)