BAC Information

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BAC

Clone NameMSMg01-133L22
Chromosome13 (Build37)
Map Location 3,354,029 - 3,354,273
singlet/doubletsinglet
Overlap geneLOC667411
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228
Downstream geneLOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133L22.T7 (MSMg01no133_l22.b1)MSMg01-133L22.TJ (MSMg01no133_l22.g1)
ACCAG340640AG340641
length715733
length of high quality
(start - end)
80 (217 - 296)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no133_l22.b1 PHD_FILE: MSMg01no133_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:38 2005CHROMAT_FILE: MSMg01no133_l22.g1 PHD_FILE: MSMg01no133_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCCCTT
GGCAGACCCCTTGTCCCTTGGAAGAAGCCCTTAGTTAGGCAAACTTGTAC
TTTCCCTGCCTCACCCCTCCCCCCTTGAGTTTTTCCTATATAAGCCTGCG
AAAAATTTGGCTCGAGGTCGATTCTCCTCTACACCATACTAGGAGCATGA
GTTTCGACCCCAGAGCTCTGGTCTATGTGCTTTCTTGCTGTTGCTTTATT
AAATCTTGCCTTCAACATTTTGAGGTCGGTCTCAGTGTCTTCTTGGGTCC
GCGACTGTCCCGATTCTTGAGTGAGGTTCTCCCTTCGGGTGGTCTTTCAC
CTTANGTACGTCCGNACCAAGACCCAGCTGTCCTTTCTGAAGCAAGTCTC
TGGAAACAGCCTCAAAAAAAAAAAAAATCAGGCTGGCTGCTGGAACATCA
TGTCACCTCAGCATTCCTGAACCTGGAACTGCAGGTTACCTCAGCATTCC
TGATCCTGGAACAGTAAGCCACCTCAGCATTCCTGAAGCTGGAACAGCAG
GTCGCCTCAGCATTTCTGAACATGGATCAGCAGGCCAACTCAGCATTCCT
GAAGCTGGAACAGGAAGTCGCCTCAGCATTCCTGAACATGGAACATAACG
TTACCTCAGCATTCCTGATACTGGGACCTCACCGTACCTCAGCATTCCTG
ATGTTGGTACCGCAG
ACAGTGATAGGCCTGGCGGCGACTGGCCTTTCATTATGGGGGAACTATAG
AAGGTCCTTCCAATAATTAATCTGCAGTAAAGAAATAATATATAGCTCTT
AATTGCTTAGCGTGGGAGCCTTATGGAGTAGTAGACTCCAGGTTACCATG
GTTGTGGATCTTGTAAGCAAAGTGATTCTTCTTTAGGAATTAAAAGGATA
ACTGTTGCCAGGGACAGCCCAGGGGTGTTTAGAACCTGGATTGATGGGCA
TTTCTCAAAGTTGTCTTCTCAAACCTGGTAGATCTTCCAGAGTTCTTGTG
ATGGAAAAAGAGATGCTTTTTTTGTGCTTGGGGAAGGCAGCGCATTCCAT
CCCTGCCTAGAATGCAGCCAGCAGAGTAGCTGCCCACATGTATACAACAC
AAGGCTGTCAGCACCTCCCACAGTTACTGAGTGCATTGCGGAAAGCTGGC
CTATAATCATTTATATACACTGTACTCGGATAACACAATGTATGTGGCAC
GCACTAGCGAACTATTTTCCATTTGTGACCACCTGAGAAAGCGATTCAAG
GCTGAATTCCTCTTTATTTCCTCACACTTTTATATCCCTCACCCGTCATC
ACGGAATGTCCCCTTTAACGGACTGTTTTATCCGGCTACAGCAACGTCTT
TTTATAATACTACCTCCAGAGTCTACTCATCATTCACACTTTGCTTCATG
TGCCCCTCTCTCTCTTTCAGCAAATCATCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_l22.g1 MSMg01no133_l22.g1 CHROMAT_FILE:
MSMg01no133_l22.g1 PHD_FILE: MSMg01no133_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:38 2005
         (245 letters)



>mm_chr13_3353829_3354473
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcagtaaagaaataatatatagctcttaattgcttagcgtgggagccttatggagta 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tctgcagtaaagaaataatatatagctcttaattgcttagcgtgggaggcttatggagta 260

                                                                       
Query: 61  gtagactccaggttaccatggttgtggatcttgtaagcaaagtgattcttctttaggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagactccaggttaccatggttgtggatcttgtaagcaaagtgattcttctttaggaat 320

                                                                       
Query: 121 taaaaggataactgttgccagggacagcccaggggtgtttagaacctggattgatgggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaggataactgttgccagggacagcccaggggtgtttagaacctggattgatgggca 380

                                                                       
Query: 181 tttctcaaagttgtcttctcaaacctggtagatcttccagagttcttgtgatggaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctcaaagttgtcttctcaaacctggtagatcttccagagttcttgtgatggaaaaag 440

                
Query: 241 agatg 245
           |||||
Sbjct: 441 agatg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)