BAC Information

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BAC

Clone NameMSMg01-133P12
Chromosome13 (Build37)
Map Location 45,570,325 - 45,570,908
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip
Downstream geneGmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133P12.T7 (MSMg01no133_p12.b1)MSMg01-133P12.TJ (MSMg01no133_p12.g1)
ACCAG340802AG340803
length705717
length of high quality
(start - end)
584 (120 - 703)104 (191 - 294)
definitionCHROMAT_FILE: MSMg01no133_p12.b1 PHD_FILE: MSMg01no133_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:56 2005CHROMAT_FILE: MSMg01no133_p12.g1 PHD_FILE: MSMg01no133_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:56 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGATTATCCAGAGTCCTCCGGAGCGAGCATCCTATGGCAACCCACTG
CCCTTAGCAACAGCCCGCCAGGTCACAAAAGCAGGGTCAAGGTACAAACA
GATAACCTAAGACATCCTGCAGAGAATAGATAACCTGACCATCCTGTTTG
GTTCCTACAGATTATGCCAGAAATGCAGTTTTAAAAATATTAACTTGCTG
ACCTGTATGGAAAATTCCCAAGTTTGCTGCAACCACAATAAACAACCTGA
ACTCCTAGACTCGTGTCTCTCACTCTGACCCCCTGCGACAGTGAGAGTCT
GAGATACCTTGCTTGAGAACTTGTAATAAAGATCCCTGTGTGTGCATCAG
AATTGGCTCCTCAGCTGTCTTTGGGTTCCTGCAACTTGAACATAACAGTT
TATTCATTGCTGGGGATCAAACCCAGAGGTGAGGTGCCCAGTGCCCGCCA
GGCAAACACTCCCCGTGGTGAGCTATACTCCCAGGCCCAGTGCTGGCTTA
GTTTTCTGGATGGATGGTCTGTGCTTTGAATTTGCATTTCTCTGATAGCT
AATAATGTTGATCAAATCCTCATACTTTCATTTGCCATCTGTATATCTTC
TTCCTCTGTGAAATATCTGTTCTATTTTTTCATCCGATTTCTAAGTTGTT
TTGGG
CAATGAAGAAGGGAGGCCTGGCGAACGCCTGGATTCATACTAGGAGGGAC
CTATAGAAGTATCCCCGAAATTCAGTTGAGCTGCCACACGAAGGAAAACA
CCGCACAAACTTAGTTCAGAATCAATGGTAACTCAGTCGCTAGACACAAC
AACCAGAATGGTAATCTTGTAGGCCATATTAAATCTGAATCCTCTGGTGG
CGAATTCTGGCGGACCCACCATGTAAACTGGGGACCATCTGTAGCTACAT
CTTGTCTTCCCTCTCCTGCCTTTTCTCTTTCTCTCTCTGACCTGTAAGTC
CTGCCTACTCGTCCACTGATTGCTTTCTTTACTCATTCTGATTGGTCACG
TGAAGCCCTGATAACTTGATTCACTCCTCTTCCCAGATAACCCCTCTTAC
AGAAGCTGACTTAACATCATTCTACCCACATTACCAGGCCTATCCACATT
ATGGTTCGATCACATCTGTCACATAGCCCACCGTCATTCCTACCTTCGGC
ATCTTTTATTTCCCATATTCTGCTCCTTTCCTCCCTCTCTGCCCCACTTC
ACCCCTACGACCTTTCCCATATGTTTTTTGTCCGCTCTTCTCGACTCCCT
TCCCCATGTTTGAATTTTACTGCCCCTCCCTGTCCGTCTGTTTTCCTTTC
TCCTGCCATTTTTCCTCGTCAACATATTGTCTCCTCTGTGTCCCACTTCC
TGCTCCTGTACCATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_p12.b1 MSMg01no133_p12.b1 CHROMAT_FILE:
MSMg01no133_p12.b1 PHD_FILE: MSMg01no133_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:56 2005
         (584 letters)



>mm_chr13_45570259_45571242
          Length = 984

 Score = 1052 bits (544), Expect = 0.0
 Identities = 574/584 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtcacaaaagcagggtcaaggtacaaacagataacctaagacatcctgcagagaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aggtcacaaaagcagggtcaaggtacaaacagataacctaagacatcctgcagagaatag 591

                                                                       
Query: 61  ataacctgaccatcctgtttggttcctacagattatgccagaaatgcagttttaaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 590 ataacctgaccatcctgtttggttcctacagattatgccagaagtgcagtttttaaaata 531

                                                                       
Query: 121 ttaacttgctgacctgtatggaaaattcccaagtttgctgcaaccacaataaacaacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttaacttgctgacctgtatggaaaattcccaagtttgctgcaaccacaataaacaacctg 471

                                                                       
Query: 181 aactcctagactcgtgtctctcactctgaccccctgcgacagtgagagtctgagatacct 240
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 470 aactcctagactcggggctctcactctgaccccctgcgacagtgagagtctgagagatct 411

                                                                       
Query: 241 tgcttgagaacttgtaataaagatccctgtgtgtgcatcagaattggctcctcagctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgcttgagaacttgtaataaagatccctgtgtgtgcatcagaattggctcctcagctgtc 351

                                                                       
Query: 301 tttgggttcctgcaacttgaacataacagtttattcattgctggggatcaaacccagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 350 tttgggttcctgcaacttgaacataacagtttattcattgctgggaatcaaacccagagg 291

                                                                       
Query: 361 tgaggtgcccagtgcccgccaggcaaacactccccgtggtgagctatactcccaggccca 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 290 tgaggtgcccagtgcccgccaggcaaacactcaccgtggtgagctatactcccaggccca 231

                                                                       
Query: 421 gtgctggcttagttttctggatggatggtctgtgctttgaatttgcatttctctgatagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtgctggcttagttttctggatggatggtctgtgctttgaatttgcatttctctgatagc 171

                                                                       
Query: 481 taataatgttgatcaaatcctcatactttcatttgccatctgtatatcttcttcctctgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 taataatgttgatcaaatcctcatactttcatttgccatctgtatatcttcttcctctgt 111

                                                       
Query: 541 gaaatatctgttctattttttcatccgatttctaagttgttttg 584
           ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 110 gaaatatctgttctagtttttcatccgttttctaagttgttttg 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)