Query= MSMg01no135_o02.b1 MSMg01no135_o02.b1 CHROMAT_FILE:
MSMg01no135_o02.b1 PHD_FILE: MSMg01no135_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:06 2005
(244 letters)
>mm_chr13_18407578_18408221
Length = 644
Score = 410 bits (212), Expect = e-119
Identities = 233/240 (97%)
Strand = Plus / Plus
Query: 1 aggttcatgtctgtacatgtctgtaagagagtggacctttggtaatgtggatgtccttag 60
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 201 aggttcatgtatgtacatgtctgtaagagagtggacctttagtaatgtggatctccttag 260
Query: 61 tggaatcggtgatgctctagttaatgcataaatacgtctatcttttattttaaggcttca 120
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 261 tggaatcggtgatgctttagttaatgcataaatacatctatcttttattttaaggcttta 320
Query: 121 ggttacagggaagagagttatttggaggccgttccttggccttcttaattttgtatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttacagggaagagagttatttggaggccgttccttggccttcttaattttgtatttat 380
Query: 181 ttgtaagaaagcatcttccctgagctaggagaggacatggaacacaaggccgtggcttct 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ttgtaagaaagcatcttccctgagctaggagaggacatggaacacaaggctgtggcttct 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no135_o02.g1 MSMg01no135_o02.g1 CHROMAT_FILE:
MSMg01no135_o02.g1 PHD_FILE: MSMg01no135_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:06 2005
(431 letters)
>mm_chr13_18486062_18486891
Length = 830
Score = 803 bits (415), Expect = 0.0
Identities = 427/431 (99%), Gaps = 1/431 (0%)
Strand = Plus / Minus
Query: 1 agtgagtaatgagaactaaaatatttttttacgcttatatcttcagatttttctccctca 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 630 agtgagtaatgagaactaaaatatttttttacgcttatatcttcaga-ttttctccctca 572
Query: 61 cagtcattttaatgtgacaccttacagggaacagttcaaggatgaactggtgcgtctaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cagtcattttaatgtgacaccttacagggaacagttcaaggatgaactggtgcgtctaca 512
Query: 121 atcaggtgtgtgccagggcttcacagtagcttttcttattgcaacacacaccattcatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atcaggtgtgtgccagggcttcacagtagcttttcttattgcaacacacaccattcatta 452
Query: 181 gttttacagtaatagcatcttcattaagcatcatatatagtttaattagtggacatttct 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gttttacattaatagcatcttcattaagcatcatatatagtttaattagtggacatttct 392
Query: 241 attattgcctctttataattaggacctaaatatacttcttattctaactctgacactaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attattgcctctttataattaggacctaaatatacttcttattctaactctgacactaaa 332
Query: 301 gttctaaatacaaatatgaactcagtaaacggattattaaaataatttaacttggaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gttctaaatacaaatatgaactcagtaaacggattattaaaataatttaacttggaatgt 272
Query: 361 ataaattatgagtagaatcaatgattttttttagtatctattacataaacagggagcatt 420
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 271 gtaaattatgagtagaatcaatgattttttttagtgtctattacataaacagggagcatt 212
Query: 421 aacaccctaat 431
|||||||||||
Sbjct: 211 aacaccctaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 830
Length adjustment: 9
Effective length of query: 422
Effective length of database: 821
Effective search space: 346462
Effective search space used: 346462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
