CCCCCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTATTATATTTTCCCTGGAATTTATTAGTTATTATCCC
ATCAGAAATGAAACAAGTACCAATTTTATTGAACCTGACTGCCAGGCCTA
CACCCTCTTCTGCAAATGAAGGATTAGATTGTGTAAAGAAACAGGTTTAG
GTCCTAAAAGTGCAGTTGCCATGATCATTTCAGATCAGTTCAGCCCATAG
CACTTCCATAATAACAAACATTAAGAAACCTGCAGTAGGGATGGTTTCCA
TGGAGTTCATTGCTAAGAGTACGTCCAGCACTGAGTGAAAACAGAACAAG
GCATTTCCAGATAGAGAAGAAATAAAAGAAGAAAAATATACAGAGAGTGA
TGGGGATAGCCAATTCTATGGTACATGCAAAAATCTGGGAAAAAATAAAC
ATATATCATGAAATATTATAATTGAAAACAAGGCCAATGGGGACCAACAA
CTGAGCAGCATTGGGGACCAATAACTGAGCAGTAACAGGGACCAACAACT
GAGCAGCTATGGAAACCAACAACTGAGCAGTAATAGGGACCAACAACTGA
GCAGCATTGGGGACCAATAACTGAGCAGCAATTGGACCAACAACTGAGCA
GCTATGGGAACCAACAACTGAGCAGTAACAGGGACTAACAACTGAGCAGC
AATTGGACCAACAACT

CCCCCCCTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGATGTTGGAAGACT
GCTGTGTGAAAGTGACTTAGGTCTTTTTTTTTGTAGTTGTTTTTAGACTT
ATTTATTTGTGCATGTGTGTGTGTATATAGTGTCTGTGTGTCTTTTTGCC
TGTGTGTCTGTGTGTGCACTCATGTGTATCTGTGCATGTGTGTGTGCATG
TGTGTATGTGTGTATGTGTGTGTATGTGTGTATGTGTGCCNCNCCCCCCC
CCCCAATTCCCTCAAAACCCATTTTTTTTTTCTCACTTACTAATATTTTC
TTTGATATCTAACCTTTCTACCCCACCCACTCAATCACAAATTTTCTCCT
TCCACTTTTCATATTACTTCCCCCCTTCTACGATATTCCATAATATATAA
TACGGACTATTCTACCATCCCCTGTCACTCATGCTCCTCTATTTTCTTTT
CCCACTAATATTCATACCTCCTCTTCTAATCGTTCATTTGTCTTTTCCAA
ACTATAAGATCCTCCATTCCTCTTTATCCCCATTCTATCATAATAACTTT
ACTACAGCTATATATCTGACTTATGTTTTTCCTATTGCCGCCCTTCACAT
TCCCTCCTCCCTATCACTCTAGCGCCCGTAGTAACTTGCAGCGATTGCTG
TTCTATACATCCATCCTATACTTCTTTATGCATTTAACCTTATTTTCCAC
GAGATTTCCT

Query= MSMg01no136_p03.b1 MSMg01no136_p03.b1 CHROMAT_FILE:
MSMg01no136_p03.b1 PHD_FILE: MSMg01no136_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:29 2005
         (663 letters)



>mm_chr13_71609929_71610990
          Length = 1062

 Score = 1199 bits (620), Expect = 0.0
 Identities = 650/660 (98%), Gaps = 2/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattatattttccctggaatttattagttattatcccatcagaaatgaaacaag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gaattctattatattt-ccctggaatttattagttattatcccatcagaaatgaaacaag 168

                                                                       
Query: 65  taccaattttattgaacctgactgccaggcctacaccctcttctgcaaatgaaggattag 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 169 taccaattttattgaacctgactgccaggcctacaccctcttctgcaattgaaggattag 228

                                                                       
Query: 125 attgtgtaaagaaacaggtttaggtcctaaaagtgcagttgccatgatcatttcagatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 attgtgtaaagaaacaggtttaggtcctaaaagtgcagttgccatgatcatttcagatca 288

                                                                       
Query: 185 gttcagcccatagcacttccataataacaaacattaagaaacctgcagtagggatggttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gttcagcccatagcacttccataataacaaacattaagaaacctgcagtagggatggttt 348

                                                                       
Query: 245 ccatggagttcattgctaagagtacgtccagcactgagtgaaaacagaacaaggcatttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccatggagttcattgctaagagtacgtccagcactgagtgaaaacagaacaaggcatttc 408

                                                                       
Query: 305 cagatagagaagaaataaaagaagaaaaatatacagagagtgatggggatagccaattct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cagatagagaagaaataaaagaagaaaaatatacagagagtgatggggatagccaattct 468

                                                                       
Query: 365 atggtacatgcaaaaatctgggaaaaaataaacatatatcatgaaatattataattgaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atggtacatgcaaaaatctgggaaaaaataaacatatatcatgaaatattataattgaaa 528

                                                                       
Query: 425 acaaggccaatggggaccaacaactgagcagcattggggaccaataactgagcagtaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acaaggccaatggggaccaacaactgagcagcattggggaccaataactgagcagtaaca 588

                                                                       
Query: 485 gggaccaacaactgagcagctatggaaaccaacaactgagcagtaatagggaccaacaac 544
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggaaccaacaactgagcagctatggaaaccaacaactgagcagtaatagggaccaacaac 648

                                                                       
Query: 545 tgagcagcattggggaccaataactgagcagcaattggaccaacaactgagcagctatgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgagcagcattggggaccaataactgagcagcaattggaccaacaactgagcagctatgg 708

                                                                       
Query: 605 gaaccaacaactgagcagtaacagggactaacaactgagcagcaattgg-accaacaact 663
           ||||||||||||||||||||| |||||| ||||||||| |||| || || ||||| ||||
Sbjct: 709 gaaccaacaactgagcagtaatagggaccaacaactgaacagctatggggaccaaaaact 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space:   686956
Effective search space used:   686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)