BAC Information

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BAC

Clone NameMSMg01-137K10
Chromosome13 (Build37)
Map Location 119,178,708 - 119,178,876
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382807, Hcn1, LOC100041695, LOC674926, Mrps30
Downstream geneLOC668309, LOC100041278, Fgf10, LOC100041298, LOC100041757, Nnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137K10.T7 (MSMg01no137_k10.b1)MSMg01-137K10.TJ (MSMg01no137_k10.g1)
ACCAG343520AG343521
length845726
length of high quality
(start - end)
109 (43 - 151)169 (69 - 237)
definitionCHROMAT_FILE: MSMg01no137_k10.b1 PHD_FILE: MSMg01no137_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:25 2005CHROMAT_FILE: MSMg01no137_k10.g1 PHD_FILE: MSMg01no137_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAATGGGCGGAATT
CTTTGTTTATTCATGAGCCCCGTTATTTAATGTGGTTATTTGATTATCTG
GAGTTTACCTTCTTGAGTTCTTTATATATATNTGGATATTATGTCCCCTA
CTCTGAATTATGGACAGGTATAAGATACTCTTCCCAAGTGATTGGTAGAT
GTTTTTTGTCTTAATTGACAGTTGTCTCTTTGGCCTTACAGTAAGCATTT
GCAATCTTCATGGAAGTCACATTTTGTCATATTCTCCGATCTTTACTAGC
ACAATGCCATTTGGCTGTTACTATTCAGTGATATTTTCCCTCCTATGTTT
CTATATCTTCTGAGTGCTTTTCCCCTACTTTTCTCTCTATATATAGTTTC
ACATGTACTCTGAGATTATATGATGGATGTTCCTATGATCCAACTTATCA
TTTTGACTGTTACGTACAAGGATGATAAGGAATGGGATCACATTTGCTAT
TCCTTCTATCATTATAATCCACTCAGTTGTTGCCAACTTCCTATTTTGTT
GTAAAATGCTTGTCATTTCCTTCCACCTGAGATAGGATTTACGCATCCCC
TTGTCCGAACGATCAATGTGAACCATAAGTGAGATGTGGCGTTCACTTTC
TTGGGTTCCTTTCATTTACTATTTCCATTTGATCTTAATTAGTCTCGTAT
ACTTGAAAACATGAACTATTGCATTTTTATATATCACAATATGCTCCTTG
TAAACTAAAGCTTTTCTCCTCTATTGCATGATTGATTTCCTACCTGAAGG
GTTCCATTTTAATCCTTTGCAGAAGATAGATCTCTGCTTATCCTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTGAAATTCTTAATATGACAAATTACAAAACTGGTAA
GCTAATTGAGGAGTGGCAGAGTTTGACGAGTCAATGTGAGGAGAGGAAAG
TGGTAAAAGTTGTCAAAGACGATGTAGCAATCGTGACAGCTACATTCTGC
TTAGATTGTTTCAGTCTCACAGTGCTGTTATTGTACTGTAGCTCAGAAAG
CTGTTATCATTACAGGAAACTAGGTAGAGGTGTATGAGATTGTAGTATAG
TATTTCTATATTCTGTACTTATTTTTTTAATTAGGATGTTAGAAGAAGCT
ATTGGACCCGGAGGACTGATGGTGTATCCCATGATAAAAGTATGCATGAG
AGCAGAGGTTCAATATCCAGTGCCACGAAAATATAAACTTACAGGTTAAG
AAAATGAGGGCAGATGCCCAGACTGACTACCATAAGGAGAGAACCAATTC
CTACAAACTGTCCTCTGTTATCCAGTTATAGCACACACCCACACACTCAC
TTACTCACACACGATTTACATTCATATCGAAATTTAATGTACTTCTTAAA
AGATTAAATAGTATATTGAACTTAGGGGAAAACTTGTTGCTTTTTCTTAA
AAAAGGCTTCAGAATTTCTGTACTCACTGCATAATTTTTTTCCATTGATT
GCTAACTATAGGAATATATTTTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_k10.g1 MSMg01no137_k10.g1 CHROMAT_FILE:
MSMg01no137_k10.g1 PHD_FILE: MSMg01no137_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:25 2005
         (169 letters)



>mm_chr13_119178508_119179076
          Length = 569

 Score =  327 bits (169), Expect = 2e-94
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttaatatgacaaattacaaaactggtaagctaattgaggagtggcagagtttgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttaatatgacaaattacaaaactggtaagctaattgaggagtggcagagtttgacg 260

                                                                       
Query: 61  agtcaatgtgaggagaggaaagtggtaaaagttgtcaaagacgatgtagcaatcgtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcaatgtgaggagaggaaagtggtaaaagttgtcaaagacgatgtagcaatcgtgaca 320

                                                            
Query: 121 gctacattctgcttagattgtttcagtctcacagtgctgttattgtact 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctacattctgcttagattgtttcagtctcacagtgctgttattgtact 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)