Query= MSMg01no137_n21.b1 MSMg01no137_n21.b1 CHROMAT_FILE:
MSMg01no137_n21.b1 PHD_FILE: MSMg01no137_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:43 2005
(668 letters)
>mm_chr13_32218742_32219810
Length = 1069
Score = 1094 bits (566), Expect = 0.0
Identities = 656/716 (91%), Gaps = 51/716 (7%)
Strand = Plus / Plus
Query: 3 gaattccattcactgtc-aagagattataagcttcacggaaattcaccacgatccaatag 61
||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 155 gaattccattcactg-caaagagattataagcttcacggaaattcaccacaatccaatag 213
Query: 62 gcatagagtttggctgctcctgttggaatacagatttttagataaagtttactctaaagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gcatagagtttggctgctcctgttggaatacagatttttagataaagtttactctaaagg 273
Query: 122 atcatgatttttattcaccctaaacaataataattcaccttaaattaaaatattatcaat 181
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 274 atcatgatttttattcaccctaaacaataataattcaccttaaactaaaatattatcaat 333
Query: 182 ccatcaaaatagcaaatcacaaggcaaaaaacaaacattgtgtgctaattaatcatgctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccatcaaaatagcaaatcacaaggcaaaaaacaaacattgtgtgctaattaatcatgctt 393
Query: 242 attaagaaataaaatttcctgctttgtaacattcataattaattcttttgccatctcact 301
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attaagaaatacaatttcctgctttgtaacattcataattaattcttttgccatctcact 453
Query: 302 tattcaactatactatttaaaatctatcaagttcaactttctgatctctctctctct--- 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tattcaactatactatttaaaatctatcaagttcaactttctgatctctctctctctttc 513
Query: 359 -----------ctctctcacacacacacacacacactcacacacacac------------ 395
||||||||||||||||||||||||| |||||||||||
Sbjct: 514 tctctctctctctctctcacacacacacacacacacacacacacacacacacacacacac 573
Query: 396 --------t--------------tttagatgagaaagaaaatatttggtatattaacatt 433
| |||||||||||||||||||||||||||| ||||||||
Sbjct: 574 acacaaactcactcacacacacatttagatgagaaagaaaatatttggtatcttaacatt 633
Query: 434 caaactgtttaaaaatgttattatgtacaagtctggtttttcctgctaggtttgagctca 493
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 634 caaactgtttaaaaatgttattatgtacgagtctgttttttcctgctaggtttgagctca 693
Query: 494 gagaaattttcatggggaaaattataaaacaaacaaatagaacatctcattgcttcagca 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gagaaattttcatggggaaaattataaaacaaacaaatagaacatctcattgcttcagca 753
Query: 554 taatctctaaacagctaaggaaaaaaa-gtcatatttgggctaaatttccatgtaaaggg 612
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 754 taatctctaaacagctaaggaaaaaaaagtcatatttgggctaaatttccatgtaaaggg 813
Query: 613 atctatgtagaaagattggaggaacagggctggtgagtgaggtggcaattttacct 668
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 814 atctatgtagaaagattgaaggaacagggctggtgagtgaggtggtaattttacct 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space: 696822
Effective search space used: 696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_n21.g1 MSMg01no137_n21.g1 CHROMAT_FILE:
MSMg01no137_n21.g1 PHD_FILE: MSMg01no137_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:43 2005
(640 letters)
>mm_chr13_32336435_32337474
Length = 1040
Score = 1139 bits (589), Expect = 0.0
Identities = 628/641 (97%), Gaps = 2/641 (0%)
Strand = Plus / Minus
Query: 1 tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 60
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 979 tcacctgaggaataccaaatggctgagaagcacctgaaaaaatgttcaacatccttaatc 920
Query: 61 atcagggaaatgcaaatcaaaacaaccctgaggtgccacctcac-tccagtcagaatgtc 119
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| |
Sbjct: 919 atcagggaaatgcaaatcaaaacaaccctgaggtgccacctcacat-ctgtcagaatggc 861
Query: 120 taagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacact 179
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 860 taagatcaaaaattcaggtgacagcagatgctggcgtggatgtgaagaaagaggaacact 801
Query: 180 cctccattgttggtaggattgcaggcttgtacaaccactctggaaatcagtgtggcagaa 239
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 800 cctccattgttggtgggattgcatgcttgtacaaccactctggaaatcagtctggcagaa 741
Query: 240 aattactttttgatgtatacttttgtttgtgtgtgtgtgtgttttcttataaatttactc 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 aattactttttgatgtatacttttgtttgtgtgtgtatgtgttttcttataaatttactc 681
Query: 300 attgattaggaggcttacagtggtttgacattttattttagttgcaatattttgatcttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attgattaggaggcttacagtggtttgacattttattttagttgcaatattttgatcttt 621
Query: 360 gataaggcaaatgtgtggaagttatattacagttaggaccggataacatcatttgtattt 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gataaggcaaatgtgtgtaagttatattacagttaggaccggataacatcatttgtattt 561
Query: 420 tgctaagttcttttcctctatgaacatgaaaaagggctttatttttttatgaactttaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgctaagttcttttcctctatgaacatgaaaaagggctttatttttttatgaactttaaa 501
Query: 480 ttgttttgaaaccgttttttgaaattacatatatttattgtatatctgtgtgtaggtact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgttttgaaaccgttttttgaaattacatatatttattgtatatctgtgtgtaggtact 441
Query: 540 ggagagctcagaggacaatttgcaggagctggttctccactaacactatgtgggttctag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggagagctcagaggacaatttgcaggagctggttctccactaacactatgtgggttctag 381
Query: 600 gaatcaaactcagggtttaagttttgaagcaagtgccttta 640
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaatcaaactcagggtttaagttttgaagcaagtgccttta 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
