Query= MSMg01no138_m07.b1 MSMg01no138_m07.b1 CHROMAT_FILE:
MSMg01no138_m07.b1 PHD_FILE: MSMg01no138_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:54 2005
(570 letters)
>mm_chr13_45042615_45043586
Length = 972
Score = 1048 bits (542), Expect = 0.0
Identities = 563/572 (98%), Gaps = 6/572 (1%)
Strand = Plus / Plus
Query: 1 gcttggaatg-acagcaagccctcaaatgtcacacttctgacagttacagtaactggcag 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttggaatgtacagcaagccctcaaatgtcacacttctgacagttacagtaactggcag 260
Query: 60 ccgagccctgctttagaactgcatagccca-aaacgttctctgctgttcttcttcaatca 118
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ccgagccctgctttagaactgcatagcccataaacgttctctgctgttcttcttcaatca 320
Query: 119 acctttctacattctcttttccccttttaggcaaatacactaaaaaaacaaaacaaaaca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctttctacattctcttttccccttttaggcaaatacactaaaaaaacaaaacaaaaca 380
Query: 179 aacaaacaaacaaaaaaaacaacttcctttaacctaacactctctctcccattctccttt 238
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaacaaac----aaaacaacttcctttaacctaacactctctctcccattctccttt 436
Query: 239 tttcctttagccttacttttgttgttttgttaatttgagactggttcttgctttgttgcc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 437 tttcctttagccttacttttgttgttttgttaatttgagactggttcttgctttgctgcc 496
Query: 299 agactagtggactcatgggctggagcatctgaaggaaggagctgagctcacaggcacatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agactagtggactcatgggctggagcatctgaaggaaggagctgagctcacaggcacatg 556
Query: 359 ccagcacgtgcagctcaccctaagctcccagatcttggatctgctcttctccaccctacc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccagcacgtgcagctcaccctaagctcccagatcttggatctgctcttctccaccctacc 616
Query: 419 ctcctaagagatcccagaaattataaagcagatctaccctgtgagttctaactggaactc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctcctaagagatcccagaaattataaagcagatctaccctgtgagttctaactggaactc 676
Query: 479 cttgggttcagatgaacctccatgctcccttgagcatgcactcccacaaggaacaacaat 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 677 cttgggttcagatgaacctccacgctcccttgagcatgcactcccacaaggaacaacaat 736
Query: 539 ctttaacataagcctttcaaatttgacaatgt 570
|||||||||||||||||||||||||| |||||
Sbjct: 737 ctttaacataagcctttcaaatttgataatgt 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 972
Length adjustment: 10
Effective length of query: 560
Effective length of database: 962
Effective search space: 538720
Effective search space used: 538720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_m07.g1 MSMg01no138_m07.g1 CHROMAT_FILE:
MSMg01no138_m07.g1 PHD_FILE: MSMg01no138_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:54 2005
(547 letters)
>mm_chr13_45211250_45212196
Length = 947
Score = 1027 bits (531), Expect = 0.0
Identities = 543/547 (99%)
Strand = Plus / Minus
Query: 1 tacatagaccaccaggctgacctcaaccccaagacccagcccccctctgcctccctcgtg 60
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct: 583 tacatagaccaccaggctgacctcaacactaagacccagcccccctctgcctcccccgtg 524
Query: 61 ctgagattaagtgtggaccaccatgtccagttctgttctctttctctccctggttcccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctgagattaagtgtggaccaccatgtccagttctgttctctttctctccctggttcccaa 464
Query: 121 ctgccacgagaagagcagcttgcttggctaatactttccactctatgatctattgcccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctgccacgagaagagcagcttgcttggctaatactttccactctatgatctattgcccca 404
Query: 181 aatcaacaaggccaggcagccacgggtgcaagctctggcactgtaagccgcagcaaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aatcaacaaggccaggcagccacgggtgcaagctctggcactgtaagccgcagcaaactg 344
Query: 241 aatttgatgcccacggctatttgttatcatagtgagaaaaataaggctgtaagtcccagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aatttgatgcccacggctatttgttatcatagtgagaaaaataaggctgtaagtcccagt 284
Query: 301 ccgaagctcaggacctcggggccaagaggaattgatgctttcattcaagcaaaggcagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccgaagctcaggacctcggggccaagaggaattgatgctttcattcaagcaaaggcagga 224
Query: 361 cagggggaaaggaattgaaggccttcaccaggaaggaaaatgatttcttacactgaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cagggggaaaggaattgaaggccttcaccaggaaggaaaatgatttcttacactgaagaa 164
Query: 421 catcagacttttgctctatccacgccttcatctgactgacagaagcccacctacgttagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 catcagacttttgctctatccacgccttcatctgactgacagaagcccacctacgttagt 104
Query: 481 gagggcactgtaattctctcagtctgtagattcaattgctgacttcatccaaagcacctt 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gagggcactgtgattctctcagtctgtagattcaattgctgacttcatccaaagcacctt 44
Query: 541 cacaaaa 547
|||||||
Sbjct: 43 cacaaaa 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
